Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 129 6e-25 seq483 105 7e-18 seq444 87.8 2e-12 >seq3 Length=82673 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||| | |||||||||||| | |||||| |||||||| || || ||||| Sbjct 24701 CCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGAA 24760 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || ||||| | ||||| |||||| | || | || |||||||| ||||| Sbjct 24761 AGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGA 24820 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| |||| ||||| | | ||| | | || | |||||||| Sbjct 24821 ATGCCTTCCTTATC-TTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCAC 24879 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || ||||| ||||| || || || |||||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCAT 24927 >seq483 Length=14038 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || |||||||| ||||| ||||| Sbjct 6391 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGAT 6332 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||| |||||| |||| | | ||| ||||| || || Sbjct 6331 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 6272 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| |||| | ||| | ||||| | | ||||| Sbjct 6271 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCACT 6212 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || || || || || ||||| ||||| ||||||||| || Sbjct 6211 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCATACCT 6161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || ||||| || ||||||||||| Sbjct 5935 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAAT 5876 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||| |||||| |||| | | ||| ||||| || || Sbjct 5875 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 5816 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| || | | ||| | ||||| | | ||||| Sbjct 5815 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACT 5756 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || || || || || || || ||||| || |||||| || Sbjct 5755 TCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCATACCT 5705 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || ||||| || ||||| ||||| Sbjct 6163 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 6104 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||||| || ||| |||| | | ||| ||||| || || Sbjct 6103 AAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGA 6044 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| |||| | ||| | || || | | || || Sbjct 6043 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACT 5984 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || || ||||| ||||| ||||||||| Sbjct 5983 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCATA 5936 >seq444 Length=15175 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 153632 GGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTC 153691 |||||| || || || ||||||||||| ||| | || | ||||| ||| |||| Sbjct 5211 GGCAATAGAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTT- 5269 Query 153692 CGCA-CACAAATTGCTGCATTTTATCAGGCCGCAA-TTACTTTGATTGCTTTTGCGGTTA 153749 |||| || |||||||| ||||| || || | ||| || ||||||| |||| |||| Sbjct 5270 CGCAGCATAAATTGCTACATTTAAT-AGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTA 5328 Query 153750 CAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 ||||| || || |||| ||| ||||| || || ||||| |||| ||| || ||| Sbjct 5329 CAAGCATCTTTATATAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAAT 5384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045503013600