Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq64 210 2e-49 >seq64 Length=40286 Score = 210 bits (232), Expect = 2e-49 Identities = 600/902 (67%), Gaps = 33/902 (4%) Strand=Plus/Minus Query 13557 TCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTA 13616 ||||||| | ||||| || ||||||||| || |||||||||||||||||| || Sbjct 17127 TCTTTGT--GCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTT 17070 Query 13617 GTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACAT-AAACAC 13675 ||||| |||| | || ||| ||||| || |||||| ||| ||| ||| ||| || Sbjct 17069 GTTTTTCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTT-TTGGCATGAAAAAC 17011 Query 13676 TTTATCACAACCTAG---TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGA 13732 ||| || |||| |||||||||| | |||||||| ||| ||||||||||| || Sbjct 17010 TTTTGAGCAGCCTAAACATTCTAATAGT---CGATCAGCAACAAATTCAATATATTGTGA 16954 Query 13733 CATTAAATCACAATTCATACCTATTAGTTTTACAGG--AATTATATTGGTTAAAAATTCT 13790 |||||| ||||||| || || || | ||| | ||| || | | | |||| | Sbjct 16953 CATTAATCTGGAATTCATTCCAATAAGATC-ACATGGTAATGAT-TCGCAGATAAATGAT 16896 Query 13791 TTTTCTATAGACACAGCCTCTTTTATAATAAT-TGTAATAATCTCATTAGAAGGAGGATA 13849 |||||| | ||||| ||||| | ||| | |||| || | | || | | | || Sbjct 16895 CTTTCTACATCTACAGCTTCTTTAACTATATTATGTACTACTTT--TTCGG-GTAATTTA 16839 Query 13850 TTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907 |||| | || | |||||||| |||||| || | || ||||||||||| Sbjct 16838 TTTTCTAATAAACTATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTG 16779 Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || | ||| || ||| || | ||| |||| | ||||||| ||||| || ||| Sbjct 16778 ATCAATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATT 16719 Query 13968 GCAGCAAA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 ||| ||| | | | || |||||| || ||||| |||| || | | || || Sbjct 16718 GCACAAAAACTTCCACTAAATAGAATA--CCTTCAACACAAGCATTGGCAACAATTCTTT 16661 Query 14026 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 | |||| || || ||| |||||||| |||||| | ||| ||||| | Sbjct 16660 CAGCAAAAGAG---TTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTA 16604 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAAT 14143 | | || |||||||||||| |||||||| | || ||| || | || ||| Sbjct 16603 CAGCAGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTT--AAT 16546 Query 14144 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14203 || ||||||| | || || || |||| || || || ||||| | |||||||||||| Sbjct 16545 ATAATTATCAATCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAA 16486 Query 14204 ACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCG-GCCAAAT 14262 | |||||| | | ||||| | ||||||||| |||| ||| | | |||| Sbjct 16485 AGAATAAAACTTTTTTGCTTCAGCAATTTGTACTTCTCTCAAAAA-CTTACAAGATAAAT 16427 Query 14263 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14322 |||| || || |||||||||||||||||||||||||| | | || || || | || Sbjct 16426 TTTCTAACACAATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTT 16367 Query 14323 GCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAA 14382 ||| | | || | ||| |||| |||||| |||| | ||| | ||| ||| Sbjct 16366 TCTCATTGTCTTTTAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAG 16307 Query 14383 CTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAG 14442 | ||||||||| ||| | ||||||||||| | |||| | ||| |||||| || | Sbjct 16306 CAGTCCAAAAAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCG 16247 Query 14443 GA 14444 || Sbjct 16246 GA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479710112142200