Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq64 172 5e-38 >seq64 Length=40286 Score = 172 bits (190), Expect = 5e-38 Identities = 589/899 (66%), Gaps = 27/899 (3%) Strand=Plus/Minus Query 13345 TCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTA 13404 ||||||| | ||||| || ||||||||| || ||||||||||||||| || || Sbjct 17127 TCTTTGT--GCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTT 17070 Query 13405 GTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACAT-AAACAC 13463 ||||| |||| | || ||| ||||| || ||||| ||| ||| ||| ||| || Sbjct 17069 GTTTTTCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTT-TTGGCATGAAAAAC 17011 Query 13464 TTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACAT 13523 ||| || |||| | ||||| || |||||||| ||| ||||||||||| ||||| Sbjct 17010 TTTTGAGCAGCCTAAACATTCTAATAGTCGATCAGCAACAAATTCAATATATTGTGACAT 16951 Query 13524 TAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT-ATTAGTTAA-AAATTCTTTT 13581 ||| ||||||| || || || | ||| | | || ||| | | |||| | || Sbjct 16950 TAATCTGGAATTCATTCCAATAAGATC-ACATGG-TAATGATTCGCAGATAAATGATCTT 16893 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCT-TAATAATGTCATTAGAAGGAGGATATTT 13640 |||| | ||||| || || | ||| | | || || | | || | | | ||||| Sbjct 16892 TCTACATCTACAGCTTCTTTAACTATATTATGTACTACTTT--TTCGG-GTAATTTATTT 16836 Query 13641 TAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698 | | || | |||||||| |||||| || | || ||||||||||| || Sbjct 16835 TCTAATAAACTATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATC 16776 Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 | ||| || ||| || | ||| |||| | ||||||| ||||| || |||||| Sbjct 16775 AATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCA 16716 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 || ||| ||| | || || ||||| |||| || | | || ||| || Sbjct 16715 CAAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCA 16656 Query 13819 AACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAA 13876 || || || || | || |||||||| |||||| | ||| ||||| | | Sbjct 16655 AAAGAG-----TTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAG 16601 Query 13877 AATCCATTGTTTCGATTGCATTGAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTA 13934 | || |||| || |||| ||||||| | || ||| || | || ||| || Sbjct 16600 CAGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTT--AATATA 16543 Query 13935 TGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACC 13994 ||||||| | || || || |||| || || || ||||||| ||||||||||||| Sbjct 16542 ATTATCAATCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGA 16483 Query 13995 ATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTT 14053 |||||| | | ||||| | |||||| || |||| ||| | | || |||| Sbjct 16482 ATAAAACTTTTTTGCTTCAGCAATTTGTACTTCTCTCAAAAA-CTTACAAGATAAATTTT 16424 Query 14054 CATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCT 14113 | ||||| |||||||||||||||||||||||||| | | || || || | || || Sbjct 16423 CTAACACAATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCT 16364 Query 14114 CTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTG 14173 | | | || | ||| |||| |||||| |||| | ||| | ||| ||| | | Sbjct 16363 CATTGTCTTTTAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAG 16304 Query 14174 TCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14232 |||||||| ||| | ||||||||||| | |||| | ||| |||||| || ||| Sbjct 16303 TCCAAAAAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478570954620120