Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq444 392 4e-104 seq64 210 3e-49 >seq444 Length=15175 Score = 392 bits (434), Expect = 4e-104 Identities = 1118/1700 (66%), Gaps = 42/1700 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| || || ||||| || ||||||||||| | || || | |||||| |||||| Sbjct 4444 TGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTCC 4503 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 71058 || | |||||| || | | ||| | ||| || || | | || ||| ||||| | Sbjct 4504 CAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACACTT 4563 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 ||| | ||||| | | ||| || ||||||| ||||| ||| || |||| Sbjct 4564 CCATTGTGAGCAATCAGTTGTTGTTTCATATCTTCATCCCATAGACCTCTATCAAATAAA 4623 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 || | | ||||| ||||| ||||| ||||||||| |||||||| | ||| Sbjct 4624 TCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATAA 4683 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 || || || || || ||||| | || ||||||||||| |||||||| | || || || Sbjct 4684 ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCC 4743 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT--GATCGGATTTTATCTT 71296 || |||||||| || | |||| | |||||| | ||||||| ||| ||||| | || Sbjct 4744 GTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATT--ATTTTTTGTT 4801 Query 71297 TTAGAGATTCCCAATTCCAA-AGATCCGATGGTACA---ACNNNNNNNNNNNNNNNNNNN 71352 ||| ||||| |||||| | | || ||| || Sbjct 4802 TTAATTCATCCCAGTTCCAATATTTATTATC-TACTTTTACATTCCACATGTCAAACTGC 4860 Query 71353 NNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCT 71412 || || || || || |||| | |||| || || | ||| | | || Sbjct 4861 AAAATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCC 4920 Query 71413 AGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 | ||| || | | || || ||| || |||| || ||||| ||||| | || || | Sbjct 4921 AATTCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAA 4979 Query 71472 ATCTTGTGCTTCCGGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 |||| || || | | || || ||||||| | || | || || | ||| || |||| Sbjct 4980 TTCTTTGGCATC-GTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATC 5038 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 ||||||| ||||| || || ||||| |||| | ||| |||| || |||||| || | Sbjct 5039 CTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTG 5098 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 |||||||||| | ||||| ||||||| | |||||| || | | || | ||| | Sbjct 5099 GATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCAT 5158 Query 71651 TTAGTTTGAGAAAATCAAAT---CTCCCATCTAT---TACAAAC--ACGTTCAAGGCAAC 71702 ||||| ||||||||| || || || |||||| || | ||||||| Sbjct 5159 AAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACAT--AAGGCAAT 5216 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || | ||| ||||||||||| || | | | ||||| || |||||| ||| Sbjct 5217 AGAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGCA 5276 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | ||| ||||| || || ||||| || ||||||||||| || |||||| ||||| Sbjct 5277 TAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATC 5336 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||||| | ||| | || || || ||||| || ||| || || ||| || ||| | Sbjct 5337 TTTATATAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAA 5396 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAAT 71940 || |||| || | | |||| | || | |||| ||| |||| ||| |||||| Sbjct 5397 ATCTTGAGCTGGTACTGT--TCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAAT 5454 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATCCAGGACATTCATTCGGACACATCAA 71999 ||| || || |||||||| | || || || ||||||||||| || |||||||| || Sbjct 5455 TTTTCAAATTCTTCTCCCCAGGT-TTCACTCAAACCAGGACATTCGTTAGGACACATTAA 5513 Query 72000 TGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 | ||| ||| || || ||||||| |||||||||||||||||||||||| ||||| Sbjct 5514 AGTCCATTCTTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATA 5573 Query 72060 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 ||||| |||||| | ||| || || ||||| || ||| | | ||| | || | Sbjct 5574 AAATAAATCTCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTC 5633 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 | | ||| |||||||||||||| | || || || | | || | ||| || Sbjct 5634 AAATACATCTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCC 5693 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 || ||||||| |||||||| |||| |||| | ||||| ||||| || |||| ||||| Sbjct 5694 CCCTTGATCTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCATT 5753 Query 72240 GGATGCACCATTGGTCCCGGAGATAT----AGCTTCCACTGGCACGAATATTGCTAATTG 72295 ||| || ||||| || || | | || || || || |||| | || Sbjct 5754 GGAATTTCCGTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTAC--ATCTTGC--ACTG 5809 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 || ||| || || ||||| |||| || | ||| ||| | ||||| || ||| | | Sbjct 5810 CTACACCAATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAA 5869 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 | || || || ||| | ||| | || ||| || ||||||||| | | Sbjct 5870 TACCTTCAATGGAATCGGACTGAATGGACAATAAAAAGCAAGAAGACATTTGTGGTCTTG 5929 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 |||||| | || || || || |||| ||| || ||||| |||||| |||| | || Sbjct 5930 GAGTTCCGGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATCAAAT 5989 Query 72476 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATT 72534 || || || | ||| || | ||| || || || || || | | || | ||| Sbjct 5990 GATATGTTTCCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCTCATC 6048 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 |||| ||| || ||||| || || || |||||||| ||| ||||| || ||| |||| Sbjct 6049 AACAAATGTTGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCTTTCT 6108 Query 72595 AAAGTTTTAAAACCAAAATA 72614 |||||||| ||||||||||| Sbjct 6109 AAAGTTTTGAAACCAAAATA 6128 >seq64 Length=40286 Score = 210 bits (232), Expect = 3e-49 Identities = 587/890 (66%), Gaps = 22/890 (2%) Strand=Plus/Minus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 ||| | ||||||||| |||||| || || | || | |||||| || ||||| || || Sbjct 17124 TTGTGCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTT 17065 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 ||||| || || ||| ||||| || ||| || || | ||| | ||| |||| Sbjct 17064 TCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGA 17005 Query 41875 AAATCCCAA---TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT 41931 | || || ||| ||| | || ||| || | ||||| |||||| | ||| | Sbjct 17004 GCAGCCTAAACATTCT--AAT-AGTCGATCAGCAACAAATTCAATATATTGTGACATTAA 16948 Query 41932 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 41989 | |||||||||| ||||| | | ||| | || | ||| | |||| | ||| Sbjct 16947 TCTGGAATTCATTCCAATAAGATCACATGGTAATGATTCGCAG--ATAAATGATCTTTCT 16890 Query 41990 ATAGAGACCGCGTCTGT---TATAATAGATCTTACTGTTTCT--TCACTCGGTGGATACA 42044 | | || || ||| | |||| || | |||| |||| | | | | || Sbjct 16889 ACATCTACAGCTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTTATTTTCTA-- 16832 Query 42045 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTA 42104 ||||| || |||| ||||| ||||| ||||| || ||||||||||| || | Sbjct 16831 ATAAAC---TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCA 16775 Query 42105 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164 |||| || ||| |||||||| ||||| | | ||||| | ||| || || | Sbjct 16774 ATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCAC 16715 Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 42224 ||| |||| ||| | || ||||| || ||| ||||| || ||| || || Sbjct 16714 AAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAA 16655 Query 42225 AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 42284 || | |||||| ||||| || ||||| || || ||||||||| ||| | Sbjct 16654 AAGAGTTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTA 16595 Query 42285 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGA 42344 | |||| || |||| ||| | || | ||||| |||||||| ||| |||| | Sbjct 16594 TATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAA 16535 Query 42345 TCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 42404 |||| | ||| || |||||||||| || ||||| | || |||||||| || || Sbjct 16534 TCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACT 16475 Query 42405 ATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA-GCTAAATTTTCGTTCACT 42463 | | || || | || ||||||||| | ||||| | | || | ||||||||| ||| Sbjct 16474 TTTTTGCTTCAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACACA 16416 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| ||| || | | Sbjct 16415 ATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCT 16356 Query 42524 GTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583 |||| | | |||| || | ||| |||| | ||| | |||||| | |||||||| Sbjct 16355 TTTAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAA 16296 Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 || |||||||| |||||||| | || ||| | || ||||| ||| || Sbjct 16295 GAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGG 16246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671114174897080