Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq483 116 3e-21 >seq3 Length=82673 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||||||||| ||||| || || || | |||||||||||||| || |||||||| Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | ||| ||||||||||||||||| || ||| | || | | ||| ||||| || Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | |||||| || || |||||| |||||| | ||| | ||| || ||| Sbjct 24820 AATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCAC 24879 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 ||| | ||| || ||||| ||||| ||||| || ||||| |||||||||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCATTTTT 24931 >seq483 Length=14038 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| ||| || || || || |||| || ||||||||||| ||||||||||| Sbjct 6393 TTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAG 6334 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||||||||| || ||| | || | || |||||||| | Sbjct 6333 ATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTG 6274 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| ||||| || || | ||| || || | |||| Sbjct 6273 GAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCA 6214 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 6213 CTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || || |||| || |||||||| || ||||||||||| Sbjct 6163 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 6104 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| |||||||| || ||| | || | || |||||||| || Sbjct 6103 AAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGA 6044 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| || || | ||| || ||| | ||| | Sbjct 6043 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACT 5984 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 5983 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || || |||| || |||||||| || ||||| ||||| Sbjct 5935 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAAT 5876 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||||| || ||| | || | || |||||||| || Sbjct 5875 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 5816 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||||| | ||| || || | |||| | Sbjct 5815 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACT 5756 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||||||| || || || || || || ||||| ||||| Sbjct 5755 TCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571945776223