Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq64 183 3e-41 >seq64 Length=40286 Score = 183 bits (202), Expect = 3e-41 Identities = 553/842 (66%), Gaps = 19/842 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || ||||||||||||||| || ||||||||||||| ||| |||||| Sbjct 17106 TTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATAAG 17047 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || || ||||| | | | | |||| || ||||| | ||| Sbjct 17046 ATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGAGCAGCCTAAACATTCTAA 16987 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | || ||||||||||| || || || ||| |||||| | |||||||| || || Sbjct 16986 TAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCATTCCAAT-AA 16928 Query 13039 TTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | ||| || | | ||| | ||| | |||||| ||| || ||||| |||||| Sbjct 16927 GATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATCTACAGCTTCTTTAACTA 16868 Query 13098 TGTCTCTTATTACGTTCTC---TAATGGAGGATTTGATAGATGCTTAAACATCATACATG 13154 | | || ||| || || |||| | | | ||| | || |||| | ||| Sbjct 16867 TATTATGTACTACTTTTTCGGGTAATTTATTTTCTAATAAAC---TATACATTAAACAAT 16811 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||| ||||||||||||||||||||| || | || || ||| || || || Sbjct 16810 TAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAGTGAGTCCAT 16751 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | ||||||| | ||| || || ||| ||| || ||| | || | Sbjct 16750 GCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTCCACTAAATAGAATAC 16691 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 ||||||| ||| || | | |||||| || | | | | | | | |||| Sbjct 16690 CTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAGAGTTCGTGTCATTA---ATCC 16634 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAAT 13393 | || ||||| |||||| | ||| || |||| | |||||||| || || | |||| Sbjct 16633 ATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGT-ATATTTTCAATAGCATGAAAT 16575 Query 13394 AAAT--AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 |||| ||| ||| ||| | | ||| ||||| |||| ||||| || || || ||| Sbjct 16574 AAATTTAATCTTTCAGCTTCATCTTTAA--TATAATTATCAATCAACAAACTGTAAGTTT 16517 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 ||||||| |||||||| | ||||| || ||| |||||| | | || || | | | Sbjct 16516 CTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCAGCAATTT 16457 Query 13512 GAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 | ||||| |||| ||| | | ||| ||||| || || || |||||||| ||| Sbjct 16456 GTACTTCTCTCAAAAA-CTTACAAGATAAATTTTCTAACACAATTCCATCACTAGCTGCA 16398 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCT 13630 ||||| || | | || || || || | ||| || || ||| || || ||||| Sbjct 16397 AAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAAGTTTCATAATCT 16338 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 ||||| | || ||||| | || ||| | |||||||||||||| | || || ||| Sbjct 16337 TTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTA 16278 Query 13691 TA 13692 || Sbjct 16277 TA 16276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430966731500166