Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq483 172 1e-37 seq64 158 3e-33 seq3 147 5e-30 >seq483 Length=14038 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||||| || ||||||||||| || || || ||| Sbjct 6166 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 6107 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||| || ||||||| ||||||||| ||||| |||| || |||||||| || Sbjct 6106 GATAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGT 6047 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || || || || || ||||||||||| | ||||| | |||| Sbjct 6046 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCT 5987 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | |||||| || || || || | |||||| || || || ||||| Sbjct 5986 ACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||||| || | |||| ||||| || |||||||| || || || || ||| Sbjct 6394 ATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCA 6335 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||| |||||||| | ||||||||||||||| |||| || |||||||| || Sbjct 6334 GATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 6275 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || || || || || ||||||||||| | || || | ||| Sbjct 6274 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCC 6215 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | |||||| || || || || | |||||| || || || ||||| Sbjct 6214 ACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||||| || ||||||||||| || ||||| || Sbjct 5938 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCC 5879 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||| |||||| |||||||| | ||||||||||||||| |||| || |||||||| || Sbjct 5878 AATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5819 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || || || || || || |||||||| | || || | ||| Sbjct 5818 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCC 5759 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| || || ||||| | || || || || |||||||| Sbjct 5758 ACTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||||| || ||||||||||| || || || ||| Sbjct 5710 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 5651 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||| |||||||| | ||||||||||||||| |||| || |||||||| || Sbjct 5650 GATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5591 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || || || || || || ||||| || | || || | || Sbjct 5590 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCA 5531 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || | |||||||||||||| Sbjct 5530 ACTTCCAAGGTAATAGTCTTACC 5508 >seq64 Length=40286 Score = 158 bits (174), Expect = 3e-33 Identities = 528/805 (66%), Gaps = 19/805 (2%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 |||||||||||||||| |||||| | ||| ||||| ||| |||| ||||| ||| | Sbjct 16291 GCTTCTTTTTGGACTGCTGAAGAAATTGATTTGTCTAGTGATTTAAAAGATTATGAAACT 16350 Query 268820 TTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGA 268878 |||||| | || | || |||| ||| || | | || |||||||||| |||||| Sbjct 16351 TTAAAA-GACAATGAGAAACATTTCATAAACCATGTGTTGGCATTTTTTGCAGCTAGTGA 16409 Query 268879 TGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGC 268938 ||| || || |||||| || ||||| | ||| ||||| ||| ||||||| Sbjct 16410 TGGAATTGTGTTAGAAAATTTATCTTGTAAGTTTTTGAGAGAAGTACAAATTGCTGAAGC 16469 Query 268939 CAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCT 268998 | | ||||| || ||||||||| |||||||||| |||||||| | |||||| | Sbjct 16470 AAAAAAGTTTTATTCTTTTCAGATAGCTGTAGAAAATATCCATTCAGAAACTTACAGTTT 16529 Query 268999 ATTAATAGATACTTATATAGATGATAACAACGAAAAGA-AAAGACTATTTTCTTCTATGA 269057 || || |||| |||||| | ||| | | | ||||| || ||||| | |||| Sbjct 16530 GTTGATTGATAATTATATTAAAGATGA-AGCTGAAAGATTAAATTTATTTCATGCTATTG 16588 Query 269058 GAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC 269116 || ||| ||| ||| | ||| ||| | |||||| |||||||| || || | | Sbjct 16589 AAAATAT-ACCTGCTGTAAAAAACAAAGCATTATGGGCAGCTAAATGGATTAATGACA-C 16646 Query 269117 GCGC-CTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 | | ||| | ||||| | ||||| ||| ||| |||||||| | ||| || Sbjct 16647 GAACTCTTTTGCTGAAAGAATTGTTGCCAATGCTTGTGTTGAAGGTATTCTATTTAGTGG 16706 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 |||| || ||||| ||||| || ||| | | |||| ||| | ||||| Sbjct 16707 AAGTTTTTGTGCAATCTTCTGGTTCAAAAAACAAAACAAAATGCATGGACTCACTTTTAG 16766 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 ||| |||||||| || || || ||||| || ||| || || ||||||| | | || Sbjct 16767 TAATGAATTGATCAGTAGAGATGAAGGATTGCACACAGATTTTAATTGTTTAATGTATAG 16826 Query 269296 TAATTATCTTTCACACAAACCTTCTCAAGATAGAGTA-TACGAAATTATAG---ATTCAG 269351 | |||| | | | ||| | | || | |||| ||| | | ||||| | || Sbjct 16827 T--TTAT-TAGAAAATAAA---TTACCCGAAAAAGTAGTAC-ATAATATAGTTAAAGAAG 16879 Query 269352 CTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGA 269411 |||| |||||||| | |||| | ||| | || | |||||||| || |||| Sbjct 16880 CTGTAGATGTAGAAAGATCATTTATCTGCGAATCATTACCATGTGATCTTATTGGAATGA 16939 Query 269412 ATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAG 269471 || || || ||| | |||||||| | || || ||||| || | | | | ||||| Sbjct 16940 ATTCCAGATTAATGTCACAATATATTGAATTTGTTGCTGATCGACTATTAGAATGTTTAG 16999 Query 269472 GGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAG 269531 | | ||| | | | | |||| || ||||||| ||||| ||| || ||| Sbjct 17000 GCTGCTCAAAAGTTTTTCATGCCAAAAACCCATTTAGTTGGATGGATCTTATTTCTTTAC 17059 Query 269532 AAGGTAAGGCTAATTTCTTCGAGAA 269556 |||| || | |||||||| || || Sbjct 17060 AAGGAAAAACAAATTTCTTTGAAAA 17084 >seq3 Length=82673 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||| || || | |||| || || ||||||||||| || ||||| || || || Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||| ||||| | ||||||||||||||| |||| | ||| ||||||||||| Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| ||||| ||||| || | ||| |||||||| | |||| | || || || Sbjct 24820 AATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCAC 24879 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| ||||| || | || || ||||| || |||||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151354393912964