Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq373 208 9e-49 seq67 172 7e-38 >seq373 Length=17423 Score = 208 bits (230), Expect = 9e-49 Identities = 472/703 (67%), Gaps = 20/703 (3%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 |||||||||||| | || |||| | ||||| |||||| | ||||| ||||| Sbjct 15246 AATTTTGAAGAATTAGGTATAGGAGCTTTAGATGACGAATTTAAAATAATTTTTCGACGA 15187 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA-CATAT 164516 | ||||| |||| | ||||| | ||||| ||| ||||||| | |||| ||| | Sbjct 15186 ACTTTTGCCAGTAGAATATATCCTAATTATATAATTAAACAATTAGG-TATAAAGCATGT 15128 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||| ||||| | ||| |||||||||| || || |||||| | || || || || Sbjct 15127 AAAGGGAATGATTTTATATGGACCTCCAGGAACGGGAAAAACACTTATTGCAAGACAAAT 15068 Query 164577 TGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAAC 164634 | || | || || | | || ||| |||||| ||||||| |||||| |||| || Sbjct 15067 CGGGAAAACGTTAAATGCTAGAGAACCG--AAAATTATTAATGGACCTGAAATATTAAAT 15010 Query 164635 AAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAA 164694 ||||||||||| |||| |||| ||| || |||| | ||| | || || ||| ||| Sbjct 15009 AAATATGTAGGACAGTCTGAAGAAAATATTCGAAATCTTTTTAAAGATGCGGAAATGGAA 14950 Query 164695 CA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGC 164753 | ||| | || || | | | ||||||| ||||| | || ||||| || ||||| Sbjct 14949 TATAAACAGAGT-GGAGAAAATTCTTTATTACATATTATTATATTAGATGAAATTGATGC 14891 Query 164754 TCTTTGCAAAAAACGTGGT-GATAATATTATTC-----------ATGATGCAGTGGTTAA 164801 |||| | | |||| || | | | ||| ||||| | || || Sbjct 14890 CATTTGTAGACAACGAGGGAGTTCAGGAGCTTCCACAGGAGTAAATGATAGTATTGTAAA 14831 Query 164802 TCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTAT 164861 |||| | | || ||||||||||| | | |||||||||||||| | | || || Sbjct 14830 TCAGCTATTGTCGAAAATAGATGGAATTAATAGTTTAAATAATATTTTGTTAATTGGAAT 14771 Query 164862 GACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAA 164921 ||| || || |||| |||||||||| |||||| | ||||| |||||||| ||||| | Sbjct 14770 GACAAATAGAATTGATCTAATTGATGACGCTTTACTTCGACCAGGTCGATTTGAATTACA 14711 Query 164922 AATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGC 164981 | |||||| ||||| || ||| | || | |||| |||||||| | ||| Sbjct 14710 TGTGGAAATATCTTTACCGGATAAAAACGGGAGAATTCAGATTTTAAATATACATACAAA 14651 Query 164982 TAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTGCCGA 165041 || |||| | ||||| |||| |||||||||| |||||| || |||||| | Sbjct 14650 AAATATGAGAAATAATGATAAATTAAGTCCCGATGTAAATTTAACAGAATTAGCTGAACA 14591 Query 165042 AACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 ||| ||||||| || || |||||||| || |||||||| Sbjct 14590 AACACCAAATTATTCGGGAGCGGAATTAGAAGGGCTAGTAAGA 14548 >seq67 Length=41086 Score = 172 bits (190), Expect = 7e-38 Identities = 394/583 (68%), Gaps = 20/583 (3%) Strand=Plus/Minus Query 6831 ATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATC 6890 ||||| | ||||||||| |||| ||||| |||| ||||||||| ||| | | || Sbjct 28931 ATGATTCATATAAATATGTGCATTTCCTAATATATGGATAAATTCATATGGAATTAAATT 28872 Query 6891 AACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACC 6950 | | |||| || || | | || || | | ||| ||||| | ||||||||||| || Sbjct 28871 ACAAACTTGGGCTATCATGTGAGTAAAAATAGAATAGGAAGCAATGTTAAAAGGTACTCC 28812 Query 6951 TAATCCCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCAT 7009 ||| |||| ||| ||||||||||| |||| ||| || || |||| || | | || Sbjct 28811 TAAGCCCAAATCACAAGATCTTTGATA-CATTATACAGGACAATTTATTTTCAAAAATAT 28753 Query 7010 AAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCC 7069 |||| ||||| ||||||||||| |||||||| | | |||| ||| ||||||| Sbjct 28752 AAAACTGACATAATACATGACAGGGAGGTAATGCCATTTTTTCTAAATCTTTAGGATTCC 28693 Query 7070 AAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTA--- 7126 | ||| | || ||| | ||||| || ||| | ||||||||| | ||||| Sbjct 28692 ATGCACATAATATAATTCTTCTATTCTTAGGA-TCATTTTTAATTAAAT--CAATTACAT 28636 Query 7127 TTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTC 7186 ||| ||||||||| | ||| | | | ||||| | ||| || |||| | || | Sbjct 28635 TTTTTAATTGATCAACACCTTTATTTGTATAATCATCATGCATGTTCGTATATTCTGCAC 28576 Query 7187 CAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAA 7246 ||||||||||||| ||||| ||||| || || ||||||||| |||| | || | || Sbjct 28575 CAAAATGTCTCCACTGAAATCCATATATGGGTCCTAAATCATTCACTTCCC--TG-TCAA 28519 Query 7247 ATCCTAATCGATT---TAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAG 7300 || ||| || ||| | ||| ||| ||||| ||| ||||| || | ||| Sbjct 28518 ATAAATTTCGTTTGTCTAA---AAATTCCCTTGTTCCATTAGCTTCCCATATTCGCACAT 28462 Query 7301 AtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTA 7360 ||| | | | ||| | |||||| |||| | | ||||| || | |||||||| Sbjct 28461 TTTTATCTAACAAAATATTTCCATTTGTTTCTCCTCTTATAAACCACAACAATTCTTCTA 28402 Query 7361 CTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 || || | |||||| | | ||||| || ||||| || || Sbjct 28401 TGATGCCTCTTAAAAACAATTTCTTTGTCGTTAATAACGGAAA 28359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595849781422800