Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq483 134 1e-26 seq3 123 2e-23 >seq483 Length=14038 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| |||| || || ||||| ||||| ||||| || || | | Sbjct 5947 AAAATTTGCATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATG 5888 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| | ||| | || |||| |||||||| |||||||||||||||| Sbjct 5887 TTATAATCCAATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGT 5828 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||||||||| | ||||| ||||| || | | |||||| Sbjct 5827 TGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCT 5768 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || |||||||||||||| | || || || || |||||||| Sbjct 5767 GATGATTCCACTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| | ||||||||| |||| || || ||||| || || ||||| ||||| | ||| || Sbjct 6398 TTAAATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTA 6339 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| | ||| | || |||| |||||||| |||||||||||||||| ||||| Sbjct 6338 ATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATC 6279 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| ||||| ||||||||||| | ||||| ||||| || | | |||||| | Sbjct 6278 TGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGA 6219 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || ||||||||||| || | ||||| || || || ||||| Sbjct 6218 TTCCACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||| |||| || || ||||| || || ||||| || || | | Sbjct 6175 AAAATTTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATG 6116 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | ||| | ||| || | ||||||||| |||||||||||||||| Sbjct 6115 TTGTAATCAGATAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGT 6056 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||||||||| | ||||| ||||| || | | ||| || Sbjct 6055 TGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCT 5996 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || ||||||||||| || | ||||| || || || ||||| Sbjct 5995 GATGATTCTACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || ||||| || || ||||| || || | ||| ||||| Sbjct 5707 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 5648 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||| |||||||| |||||||||||||||| |||||||| ||| Sbjct 5647 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 5588 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || ||||||||||| | ||||| ||||| || Sbjct 5587 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCAC 5556 >seq3 Length=82673 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 ||||||||| |||| ||| || |||||||| |||||||| ||||| | || ||||| Sbjct 24699 CTCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCG 24758 Query 94839 TCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || ||| |||||| |||| |||||||| |||| ||||||| |||||||| || Sbjct 24759 --AAAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGG 24816 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| ||||| || || | |||||| | || || | | | | ||| | || Sbjct 24817 AGGAATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTC 24876 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| || || ||||| || || | || ||||||||||| ||||| Sbjct 24877 CACTTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCAT 24927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448274484341880