Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq64 197 1e-45 >seq64 Length=40286 Score = 197 bits (218), Expect = 1e-45 Identities = 593/909 (65%), Gaps = 18/909 (2%) Strand=Plus/Minus Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183 |||||||||||| | | | ||||||| | || | | ||| || ||||| ||| Sbjct 17166 TATTTAAAAATCTGTGTTAAGACAGAAAACTTGTTCCTTTCTTTGTGCCATAACTCCTGA 17107 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 |||||||||||| |||||||||||| || |||||||| ||||||| || || ||| Sbjct 17106 TTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATAAG 17047 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| || |||||| |||| | | ||| | ||| || || | | ||| Sbjct 17046 ATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGAGCAGCCTAAACATTCTAA 16987 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || || ||| || |||||||| |||||||| |||||||| ||||||| || || || Sbjct 16986 TAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCATTCCAAT-AA 16928 Query 21364 TTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | ||| || | | || | ||| ||| |||||| | || ||||| || || Sbjct 16927 GATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATCTACAGCTTCTTTAACTA 16868 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACA----ATAATTGTTTAAACATCAAACAT 21478 |||| | | ||| | | | ||| || | |||| || |||| ||||| Sbjct 16867 TATT--ATGTACTACTTTT--TCGGGTAATTTATTTTCTAATAAACTATACATTAAACAA 16812 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 |||||| ||||| |||||||| ||||| || ||||||||| ||| || | || Sbjct 16811 TTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAGTGAGTCCA 16752 Query 21539 GGCATTAATCCTCTCTTTTTT-AACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAA 21596 ||||| | | | |||||| ||||| || |||| | |||| | ||| ||| | || Sbjct 16751 TGCATT-TTGTTTTGTTTTTTGAACCAGAAGATTG-CACAAAAACTTCCACTAAATAGAA 16694 Query 21597 TGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATA 21656 | || ||||| |||| ||||| | || |||| | | ||| | | || | Sbjct 16693 TACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAA---AGAGTTCGTGTCATTAA 16637 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 ||||||| |||||||| ||| || | ||| | | | || | |||||||| | | Sbjct 16636 TCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATATTTTCAATAGCATGAA 16577 Query 21717 AAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 | | || | ||||| || |||| | || ||| || ||| Sbjct 16576 ATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAATCAACAAACTGTAAGTTT 16517 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 | ||||| |||||||||| ||||||||||| ||||| | |||| || | | || Sbjct 16516 CTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCAGCAATTT 16457 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 | || || |||| || || ||||| || ||||||||||| || |||| Sbjct 16456 GTACTTCTCTCAAAAACTTACAAGATAAATTTTCTAACACAATTCCATCACTAGCTGCAA 16397 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 |||||||||| | || ||||| |||| | || || ||| |||| ||| ||||| Sbjct 16396 AAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAAGTTTCATAATCTT 16337 Query 21957 ATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTAT 22016 |||||| | || ||||| | |||||||| |||||||| ||| || ||||||| Sbjct 16336 TTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTAT 16277 Query 22017 ACATAATCC 22025 | | ||||| Sbjct 16276 A-AAAATCC 16269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531880966748920