Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq444 356 3e-93 seq64 194 2e-44 >seq444 Length=15175 Score = 356 bits (394), Expect = 3e-93 Identities = 1100/1693 (65%), Gaps = 28/1693 (2%) Strand=Plus/Plus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || ||||| || ||||||||||| | || || | |||||| |||||| Sbjct 4444 TGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTCC 4503 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 62252 || | |||||| || | | ||| | ||| || || | | || ||| ||||| | Sbjct 4504 CAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACACTT 4563 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 ||| | || || | | || || || |||| ||||| ||| || |||| Sbjct 4564 CCATTGTGAGCAATCAGTTGTTGTTTCATATCTTCATCCCATAGACCTCTATCAAATAAA 4623 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 || | | ||||| ||||| ||||| ||||||||| |||||||| | ||| Sbjct 4624 TCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATAA 4683 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 || || || || || ||||| | || ||||||||||| |||||||| | || || || Sbjct 4684 ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCC 4743 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62492 || |||||||| || | |||||| |||||| | ||| | | | | ||||| | |||| Sbjct 4744 GTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTTTT 4803 Query 62493 AGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTAGA 62549 | ||||| |||||| | ||| || || | | Sbjct 4804 AATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGCAAA 4863 Query 62550 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 62609 ||||| || || || |||| | |||| || || | ||| | || ||| | | Sbjct 4864 ATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCCAAT 4923 Query 62610 TC-ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62668 || || | | || || || | |||| || ||||| || || | || || | || Sbjct 4924 TCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAATTC 4982 Query 62669 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTG 62728 || || || ||| ||||||| | || | || || | ||| || |||||||| Sbjct 4983 TTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATCCTTG 5042 Query 62729 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62788 ||||||||| || || |||||||||| | ||| || | || |||||| || ||||| Sbjct 5043 AACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTGGATA 5102 Query 62789 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 62848 |||||| | ||||| ||||||| | |||||| ||| | | || | ||| | || Sbjct 5103 ATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCATAAAG 5162 Query 62849 TTTGAGAAAATCAAATCGCCCATCT-----AT-TACAAACATGTTCAAGGCAACAGATGC 62902 ||| ||||||||| | | | | || |||||| | ||||||| ||| || Sbjct 5163 TTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAATAGAAGC 5222 Query 62903 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62962 | ||| ||||||||||| || | | | ||||| || || || ||| | ||| Sbjct 5223 TAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGCATAAATT 5282 Query 62963 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63022 ||||| || |||||||| || ||||||||||| || |||||| ||||| ||||| Sbjct 5283 GCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATCTTTATA 5342 Query 63023 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63082 | || |||| || || ||||| || ||| || || ||| || ||| | || | Sbjct 5343 TAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTG 5402 Query 63083 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 63142 ||| || | | ||| | | |||| ||| ||| ||| || ||| ||| || Sbjct 5403 AGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAATTTTTCAAA 5462 Query 63143 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 63202 || |||||||| | ||| ||||||||||| | |||||||| || | ||| || Sbjct 5463 TTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAAAGTCCATTC 5522 Query 63203 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63262 | | || || |||| |||||||||||||||||||||||| ||||| ||||| ||| Sbjct 5523 TTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAATC 5582 Query 63263 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63322 ||| | ||| ||| || ||||| || ||| | | ||| | || | | | ||| Sbjct 5583 TCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACATC 5642 Query 63323 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382 |||||||||||||| | || || || | | || | ||| || || ||||| Sbjct 5643 TGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCCCCCTTGATC 5702 Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442 || |||||||| |||| |||| | ||||| ||||| || |||| || || || | || Sbjct 5703 TACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCATTGGAATTTCC 5762 Query 63443 ATTGGTACCGGAGATAT----AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63498 ||||| || || | | || || || || || | | || || ||| | Sbjct 5763 GTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTAC--ATCTTGC--ACTGCTACACCAA 5818 Query 63499 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTA 63558 | || ||||| |||| || | ||| ||| | ||||| || ||| | ||||| || | Sbjct 5819 TACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAATACCTTCAA 5878 Query 63559 TGCTATC--ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || ||| | || ||| | || ||| || ||||||||| | | |||||| Sbjct 5879 TGGAATCGGACTGA--ATGGACAATAAAAAGCAAGAAGACATTTGTGGTCTTGGAGTTCC 5936 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 | || || || || |||| ||| || ||||| |||||| || | | || || || Sbjct 5937 GGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATCAAATGATATGT 5996 Query 63677 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 || | ||| || | ||| || || ||||| || | | || | ||| |||| | Sbjct 5997 TTCCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCTCATCAACAAAT 6055 Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795 | || ||||| || || || ||||| || ||| ||||| || ||| |||| ||||||| Sbjct 6056 GTTGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCTTTCTAAAGTTT 6115 Query 63796 TAAAACCAAAATA 63808 | ||||||||||| Sbjct 6116 TGAAACCAAAATA 6128 >seq64 Length=40286 Score = 194 bits (214), Expect = 2e-44 Identities = 569/862 (66%), Gaps = 26/862 (3%) Strand=Plus/Minus Query 32994 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33053 ||| | ||||||||| |||||| || || | || | |||||| || ||||| ||||| Sbjct 17124 TTGTGCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTT 17065 Query 33054 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 33113 ||||| || || ||| ||||| || ||| || || | ||| | ||| |||| Sbjct 17064 TCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGA 17005 Query 33114 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT 33170 | || || ||| ||| | || ||| || || ||||| |||||| | ||| | Sbjct 17004 GCAGCCTAAACATTCT--AAT-AGTCGATCAGCAACAAATTCAATATATTGTGACATTAA 16948 Query 33171 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCGCAGTAAGAAATTCTTGTTCA 33228 | |||||||||| ||||| | | ||| | || ||||| | |||| | ||| Sbjct 16947 TCTGGAATTCATTCCAATAAGATCACATGGTAATGATTCGCAG--ATAAATGATCTTTCT 16890 Query 33229 ATGGATACCGCATCTGTTATAATAG-ATCTA--ACGGTTTCT--TCACTCGGTGGATGCA 33283 | ||| || ||| | | ||| || || || |||| | | | | | | Sbjct 16889 ACATCTACAGCTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTTATTTTCT--A 16832 Query 33284 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 33343 ||||| || |||| ||||| ||||| ||||| || || |||||||| || | Sbjct 16831 ATAAAC---TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCA 16775 Query 33344 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 ||| || ||| |||||||| ||||| | | ||||| | ||| || || | | Sbjct 16774 ATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCAC 16715 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463 || |||| ||| | || ||||| || |||| ||||| || ||| || || Sbjct 16714 AAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAA 16655 Query 33464 AACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 33523 || | |||||| ||||| || ||||| || || ||||||||| ||| | Sbjct 16654 AAGAGTTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTA 16595 Query 33524 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33583 | |||| || |||| ||| | || | ||||| |||||||| |||| |||| | Sbjct 16594 TATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAA 16535 Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 |||| | ||| || |||| ||||| || ||||| | || |||||||| || || Sbjct 16534 TCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACT 16475 Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACT 33702 | | || || | ||| ||||||||| | ||||| | | | | |||||||| ||| Sbjct 16474 TTTTTGCTTCAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACACA 16416 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| ||| || | | Sbjct 16415 ATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCT 16356 Query 33763 GTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 || ||||| | |||| || | ||| |||| | ||| | |||||| | ||||||| Sbjct 16355 TTTAAAGTTTCAT--AATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAA 16298 Query 33821 ATGATGCCTCTGCCTTTTTATA 33842 | || || ||||| |||||||| Sbjct 16297 AAGAAGCTTCTGCTTTTTTATA 16276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923971856280