Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq444 156 4e-33 seq483 116 3e-21 seq3 111 1e-19 >seq444 Length=15175 Score = 156 bits (172), Expect = 4e-33 Identities = 702/1091 (64%), Gaps = 25/1091 (2%) Strand=Plus/Plus Query 132197 AGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTC-GTACGTACAAATTACT 132255 |||||| ||||||||| |||| || ||| ||||||| ||| || | || || Sbjct 4633 AGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAA-TAAATGTTGCT 4691 Query 132256 AGTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCAT 132315 ||| | || || || ||||| || ||||| || ||||| | ||| | ||||| ||||| Sbjct 4692 AGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCCGTAGGCAT 4751 Query 132316 -GTAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGT 132374 | || ||| ||||| ||||| | | || ||| || |||| |||| | || | Sbjct 4752 AGGAGCTAAT-AATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTTTTAATTCAT 4810 Query 132375 CCCAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGC 132434 |||||||||| | ||| | | |||||||| |||||||| ||| ||| Sbjct 4811 CCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGCAAAATACCTT 4870 Query 132435 TACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGC 132494 | ||||| || ||| ||| | | || || | ||| || | || || | ||||| | Sbjct 4871 TGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCCAATTCTACGG 4930 Query 132495 TCTGACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTT 132554 | || || || |||| ||||| || | ||| || | |||||||| | || | Sbjct 4931 ATTCTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAATTCTTTGGCAT 4990 Query 132555 GTTGACTGTCGTAGGGCAAATTTAAAATAGC--GAACGCATCGGCAAGTCCCTGAATGCC 132612 | || || || | || | || || | ||| | || || | ||| |||| || Sbjct 4991 CGTCCGATTCATATGG-ATATCTCAA-TAACATGAAGGTGTCAGCCAATCCTTGAACACC 5048 Query 132613 GATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTT 132672 || || || ||||||||| | ||| || |||| || | | |||||| | || Sbjct 5049 AATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTGGATAATAATT 5108 Query 132673 TTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTC 132732 | | ||||||||||||| | ||| | || | || ||| | | | ||| || || Sbjct 5109 TCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCATAAAGTTTTTT 5168 Query 132733 AAAGTCAAA--GTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAA 132790 || ||||| || ||| ||| | | | |||| | | |||||| || || ||| Sbjct 5169 GAAATCAAATTGTCTTTTTTCCATATCTA--CAAATTTACATAAGGCAATAGAAGCTAAA 5226 Query 132791 TTGCATACGGCTG--TCTCTTTATTATCGCTATACTGTACGATTTCTGCA-CACAAATTA 132847 ||||| |||||| || | | || |||| | ||| ||||| ||| || ||||| Sbjct 5227 TTGCAAACGGCTACTTCCCCTGGAGATG--TATATTCTACAATTTC-GCAGCATAAATTG 5283 Query 132848 CTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTATCTTTATGC 132907 || | |||| ||||||||||| ||||||| ||| ||| |||||||| Sbjct 5284 CTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATCTTTATAT 5343 Query 132908 AACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAAC 132967 ||||| || || ||| ||||| | ||| ||| | ||| | |||| Sbjct 5344 AACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGA 5403 Query 132968 GCCAAAATTTGTTCTTTAAACTTGCCCTGAGTCT-CGTAACTTTCGTATAATCGCTCAAA 133026 || | | ||||||| || ||| ||| | || || ||||||| ||||| Sbjct 5404 GCTGGTACT-GTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAATTTTTCAAA 5462 Query 133027 TTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTT 133086 |||||| || || || ||||||| ||||| |||| ||||||||| || | ||||| Sbjct 5463 TTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAAAGTCCATTC 5522 Query 133087 TTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATC 133146 || | | | || |||||||| || | ||| |||| | ||| |||||||||| Sbjct 5523 TTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAATC 5582 Query 133147 GCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGT 133205 | || ||| || ||||| || ||| | |||| || ||||| ||| | | Sbjct 5583 TCTTGCTCTTAAT-TCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACAT 5641 Query 133206 CTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTTACCTCCC---TGAT 133262 ||| |||||| || || ||||| | || |||| ||||| ||||| || ||| |||| Sbjct 5642 CTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCCCCCTTGAT 5701 Query 133263 CCACATGTCTA 133273 | |||| |||| Sbjct 5702 CTACATATCTA 5712 >seq483 Length=14038 Score = 116 bits (128), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||||||||| |||||| | ||||| | ||||| || | Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || || ||||||||||| || || || |||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| | || | | || || ||| | ||||| | || ||| | | | ||||| || Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAG-AACTTTATCTGATTACAA 6343 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 ||| ||||||||||| || | || ||||| |||||||| ||||||||| | |||| Sbjct 6344 CATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGAATTTAAT 6399 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||||||||| |||||| | ||||| | ||||| || | Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || || || ||||||||||| || || || |||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| | || | | ||| || ||| | ||||||| || ||| | | | ||||| || Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAG-AACTTTATCTGATTACAA 6115 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || |||||||| || | || ||||| |||||||| |||||||| Sbjct 6116 CATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6163 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||||||||||| | |||||| | ||||| || | Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || || ||||||||||| || || || |||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | || | | || || ||| | ||||| | |||| | ||||||||| Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || | || ||||| |||||||| ||||| || Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGG 5935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 |||||| | ||||| ||||| ||||| || ||| | || || || || ||| Sbjct 5517 ATTACCTTGGAAGTTGAGGCATCTGACACTATTGAGAATGTGAAGGCCAAAATCCAAGAC 5576 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 |||||||| || || || |||||||| ||| | || | | || || ||| | ||||| Sbjct 5577 AAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGAC 5636 Query 24147 GACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 | || ||| | | | ||||| ||||| || |||||||| || | || ||||| ||||| Sbjct 5637 GGAAG-AACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACTTAGTTTTAAG 5695 Query 24206 ATTGAGAGGAGG 24217 ||| |||||||| Sbjct 5696 ATTAAGAGGAGG 5707 >seq3 Length=82673 Score = 111 bits (122), Expect = 1e-19 Identities = 167/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| || || ||||| || ||| | || ||| | ||||| ||| | Sbjct 24930 AAAATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCCA 24871 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || | || || | || ||| || ||| || || |||||||| ||||| ||| Sbjct 24870 AATGATATTATTGAAAATGTGAAAACCAAAATTCAAGATAAGGAAGGCATTCCTCCTGAT 24811 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| || | || | | || || ||| | |||||| | ||| | | ||||| Sbjct 24810 CAGCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATTAC 24751 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA-CTAT 24222 || || |||||||||||||| | || ||||| || ||||| |||||||| |||| Sbjct 24750 AATATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGGAGCTAT 24695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429920369542365