Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq483 134 9e-27 seq602 107 1e-18 seq3 89.7 3e-13 seq65 84.2 1e-11 >seq483 Length=14038 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| || | || || || || | ||| || || || || |||||||||| Sbjct 6165 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAG 6106 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | | | || |||||||||||||||||||| |||| | ||||||||| | | Sbjct 6105 ATAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTG 6046 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| ||| ||||| | | ||||||| ||| | Sbjct 6045 GAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTA 5986 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 5985 CTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || | || || || || | ||| || ||||| || ||||||||||| Sbjct 6391 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGAT 6332 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| | | |||| || ||||||||||| ||||| |||| | ||||||||| | || Sbjct 6331 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 6272 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||||| ||| ||||| | | ||| ||| ||| ||| Sbjct 6271 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCACT 6212 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 6211 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || | || || || || | |||| || || || || || ||||| Sbjct 5937 TACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCA 5878 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | | |||| || ||||||||||| ||||| |||| | ||||||||| | | Sbjct 5877 ATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTG 5818 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| ||||||||| | | ||| ||| ||| | Sbjct 5817 GAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCA 5758 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 5757 CTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| || | || || || || | ||| || || || || |||||||||| Sbjct 5709 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAG 5650 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | | |||| || ||||||||||| ||||| |||| | ||||||||| | | Sbjct 5649 ATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTG 5590 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| ||||||||||| | ||| || |||| Sbjct 5589 GAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCAA 5530 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 |||| || |||||||| ||||| Sbjct 5529 CTTCCAAGGTAATAGTCTTACC 5508 >seq602 Length=11255 Score = 107 bits (118), Expect = 1e-18 Identities = 83/96 (86%), Gaps = 7/96 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT----AGTAG--ATAGGGGGTAATCTCG 25955 |||||||||||||||||||||| |||||| || ||||| | || ||| ||||||| Sbjct 3524 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTGGAATCCAAGTAGGGACAGTGGG-AATCTCG 3582 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||||||||||| Sbjct 3583 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 3618 >seq3 Length=82673 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/202 (70%), Gaps = 14/202 (7%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGC 38182 || ||||| ||||||||||| || | ||||| || || ||||||||||| || Sbjct 24737 TCTTTTTGGATATTGTAATCCGAAAGG----GTTCGGGAATCTTCCAATTGTTTTCCAGC 24792 Query 38183 AAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCAC 38242 |||||||| || || ||||| | || | |||||| || || |||||| ||||| Sbjct 24793 AAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTGGTTTTCAC 24852 Query 38243 ATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGT 38299 ||| | | | ||| || || || ||||| | || ||||||||||| || || || Sbjct 24853 ATTTTCAATAATAT---CATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTTAACGT 24909 Query 38300 TTTCACGAATATCTGCATGTTT 38321 ||||| || || ||||| ||| Sbjct 24910 CTTCACAAAGATTTGCATTTTT 24931 >seq65 Length=40740 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 19960 GTTCT-TTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAG 20018 ||||| ||||| ||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct 9160 GTTCTATTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCACTAATATTTAG 9101 Query 20019 CCTTAT 20024 | |||| Sbjct 9100 CTTTAT 9095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935022889873