Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq444 352 4e-92 seq64 210 3e-49 >seq444 Length=15175 Score = 352 bits (390), Expect = 4e-92 Identities = 1097/1691 (65%), Gaps = 24/1691 (1%) Strand=Plus/Plus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || ||||| || ||||||||||| | ||||| | |||||| |||||| Sbjct 4444 TGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTCC 4503 Query 62051 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 62107 || | |||||| || | | ||| | ||| || || | | || ||| ||||| | Sbjct 4504 CAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACACTT 4563 Query 62108 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62167 ||| | || || | | || || || |||| ||||| ||| || |||| Sbjct 4564 CCATTGTGAGCAATCAGTTGTTGTTTCATATCTTCATCCCATAGACCTCTATCAAATAAA 4623 Query 62168 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62227 || | | ||||| ||||| ||||| ||||||||| |||||||| | ||| Sbjct 4624 TCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATAA 4683 Query 62228 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62287 || || || || || ||||| | ||| ||||||||||| |||||||| | || || || Sbjct 4684 ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCC 4743 Query 62288 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62347 || |||||||| || | |||||| |||||| | ||| | | | | ||||| | |||| Sbjct 4744 GTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTTTT 4803 Query 62348 AGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTAGA 62404 | ||||| |||||| | ||| || || | | Sbjct 4804 AATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGCAAA 4863 Query 62405 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 62464 ||||| || || || |||| | |||| || || | ||| | || ||| | | Sbjct 4864 ATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCCAAT 4923 Query 62465 TC-ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 || || | | || || || | |||| || ||||| || || | || || | || Sbjct 4924 TCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAATTC 4982 Query 62524 TTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 62583 || || || ||| ||||||| | || | || || | ||| || |||||||| Sbjct 4983 TTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATCCTTG 5042 Query 62584 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62643 ||||||||| || || |||||||||| | ||| || | || |||||| || ||||| Sbjct 5043 AACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTGGATA 5102 Query 62644 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 62703 |||||| | ||||| ||||||| | |||||| ||| | | || | ||| | || Sbjct 5103 ATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCATAAAG 5162 Query 62704 TTTGAGAAAATCAAATCGCC---CATCTAT---TACAAACATGTTCAATGCAACAGATGC 62757 ||| ||||||||| | | || || |||||| | || |||| ||| || Sbjct 5163 TTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAATAGAAGC 5222 Query 62758 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62817 | ||| ||||||||||| || | | | ||||| || || || ||| | ||| Sbjct 5223 TAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGCATAAATT 5282 Query 62818 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 62877 ||||| || || ||||| || ||||||||||| || |||||| ||||| ||||| Sbjct 5283 GCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATCTTTATA 5342 Query 62878 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 62937 | || |||| || || ||||| || ||| || || ||| || ||| | || | Sbjct 5343 TAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTG 5402 Query 62938 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 62997 ||| || | | ||| | |||| ||| ||| ||| || ||| ||| || Sbjct 5403 AGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAATTTTTCAAA 5462 Query 62998 CTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTC 63057 || |||||||| | || ||||||||||| | |||||||| || | ||| || Sbjct 5463 TTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAAAGTCCATTC 5522 Query 63058 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63117 | | || || |||| |||||||||||||||||||||||| ||||| ||||| ||| Sbjct 5523 TTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAATC 5582 Query 63118 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63177 ||| | ||| ||| || ||||| || ||| | | ||| | || | | | ||| Sbjct 5583 TCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACATC 5642 Query 63178 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63237 |||||||||||||| | || || || | | || | ||| || || ||||| Sbjct 5643 TGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCCCCCTTGATC 5702 Query 63238 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 63297 || |||||||| |||| |||| | ||||| ||||| || |||| |||||||| | || Sbjct 5703 TACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCATTGGAATTTCC 5762 Query 63298 ATTGGTCCCTGAGATAT----AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63353 ||||| ||| || | | || || || || || | | || || ||| | Sbjct 5763 GTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTAC--ATCTTGC--ACTGCTACACCAA 5818 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413 | || ||||| |||| || | ||| ||| | ||||| || ||| | || || || | Sbjct 5819 TACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAATACCTTCAA 5878 Query 63414 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63473 | ||| | ||| | || ||| || ||||||||| | | |||||| | Sbjct 5879 TGGAATCGGACTGAATGGACAATAAAAAGCAAGAAGACATTTGTGGTCTTGGAGTTCCGG 5938 Query 63474 CATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 || || || || |||| ||| || ||||| |||||| || | | || || || | Sbjct 5939 AGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATCAAATGATATGTTT 5998 Query 63534 CAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 | | ||| || | ||| || || ||||| || | | || | ||| |||| || Sbjct 5999 CCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCTCATCAACAAATGT 6057 Query 63593 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63652 || ||||| || || || ||||| || ||| ||||| || ||| |||| |||||||| Sbjct 6058 TGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCTTTCTAAAGTTTTG 6117 Query 63653 AAACCAAAATA 63663 ||||||||||| Sbjct 6118 AAACCAAAATA 6128 >seq64 Length=40286 Score = 210 bits (232), Expect = 3e-49 Identities = 590/893 (66%), Gaps = 26/893 (3%) Strand=Plus/Minus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 ||| | ||||||||| |||||| || || | || | |||||| || ||||| ||||| Sbjct 17124 TTGTGCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTT 17065 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 |||| ||| || ||| ||||| || ||||| || | ||| | ||| |||| Sbjct 17064 TCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGA 17005 Query 32471 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 | || || ||| ||| | || ||| || |||||||| |||||| | ||| | Sbjct 17004 GCAGCCTAAACATTCT--AAT-AGTCGATCAGCAACAAATTCAATATATTGTGACATTAA 16948 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 32585 | |||||||||| ||||| | | ||| | || | ||| | |||| | ||| Sbjct 16947 TCTGGAATTCATTCCAATAAGATCACATGGTAATGATTCGCAG--ATAAATGATCTTTCT 16890 Query 32586 ATAGAGACCGCGTCTGT---TATAATAGATCTTACTGTTTCT--TCACTCGGTGGATACA 32640 | | || || ||| | |||| || | |||| |||| | | | | || Sbjct 16889 ACATCTACAGCTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTTATTTTCTA-- 16832 Query 32641 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 32700 ||||| || |||| ||||| ||||| ||| | || || |||||||| || | Sbjct 16831 ATAAAC---TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCA 16775 Query 32701 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 32760 |||| || ||| |||||||| ||||| | | ||||| | ||| || || | Sbjct 16774 ATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCAC 16715 Query 32761 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 32820 ||| |||| ||| | ||| ||||| || ||| ||||| || ||| || || Sbjct 16714 AAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAA 16655 Query 32821 AACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 32880 || | |||||| ||||| || ||||| || || ||||||||| ||| | Sbjct 16654 AAGAGTTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTA 16595 Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940 | | || ||||||| ||| | || | ||||| |||||||| ||| |||||| Sbjct 16594 TATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAA 16535 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 |||| | ||| || |||| ||||| || ||||| | || || ||||| || || Sbjct 16534 TCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACT 16475 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACT 33059 | | || || | ||| ||||||||| | ||||| | | | | ||||||||| ||| Sbjct 16474 TTTTTGCTTCAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACACA 16416 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119 ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| ||| || | | Sbjct 16415 ATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCT 16356 Query 33120 GTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 || ||||| | |||| || | ||| |||| | ||| | |||||| | ||||||| Sbjct 16355 TTTAAAGTTTCAT--AATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAA 16298 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230 | || || ||||| |||||||| | || ||| | || ||||| ||| ||| Sbjct 16297 AAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633608373446800