Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq483 150 2e-31 seq3 129 5e-25 >seq483 Length=14038 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || || ||| |||| ||| | |||||||| || || Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| |||||| ||||||||||| |||||||| || ||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||| || |||||||| ||||| | | ||| | |||||||| Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || |||||||||||||| |||| ||||| |||| |||||||||||| ||| Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGAATTTA 6397 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || || ||| |||| ||| | ||||| || || || Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| |||||| ||||||||||| |||||||| || ||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || |||||||| |||||||||||||||| | ||| | |||||||| Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| |||| ||||| |||| |||||||||| Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6163 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| || || || ||| |||| || | |||||||| || || Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| |||||| ||||||||||| |||||||| || ||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||| || |||||||| ||||| | | ||| | ||||| || Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| |||| ||||| |||| ||||||| || Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGG 5935 Score = 122 bits (134), Expect = 8e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAA 25085 ||||| | || || | ||||| ||| | ||||||||||| ||| ||||| ||| Sbjct 5508 GGTAAGACTATTACCTTGGAAGTTGAGGCATCTGACACTATTGAGAATGTGAAGGCCAAA 5567 Query 25086 ATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAA 25145 ||| ||||||||||| |||||||| || ||||| | | || ||||| || |||||| Sbjct 5568 ATCCAAGACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAA 5627 Query 25146 TTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTA 25205 || ||||| | | ||| | |||||||| || || ||||||||||| |||| ||| Sbjct 5628 TTGGAAGACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACTTA 5687 Query 25206 GTGCTAAGGCTAAGAGGAGG 25225 || |||| |||||||||| Sbjct 5688 GTTTTAAGATTAAGAGGAGG 5707 >seq3 Length=82673 Score = 129 bits (142), Expect = 5e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| ||||| ||||| || ||||||||| | || || | ||||||||| | Sbjct 24931 AAAAATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCC 24872 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| | ||| || |||| | |||| ||| || || ||||| ||||| |||| Sbjct 24871 AAATGATATTATTGAAAATGTGAAAACCAAAATTCAA-GATAAGGAAGGCATTCCTCCTG 24813 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || ||||| || |||||||| |||||| || || | |||| Sbjct 24812 ATCAGCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATT 24753 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||| ||||||||||| ||| | || ||||| | || || |||||||| Sbjct 24752 ACAATATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGGA 24700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433312246225145