Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq64 206 3e-48 >seq64 Length=40286 Score = 206 bits (228), Expect = 3e-48 Identities = 592/893 (66%), Gaps = 37/893 (4%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| || ||||||| || || ||||| ||||||||||||||||||| ||||||| Sbjct 17118 CATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 17059 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||||| || || || | | | | ||| || ||||| | | || |||||| | | Sbjct 17058 TAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAA-ACTTTTGAGCAGC 17000 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | |||| || |||||| |||||||| || || || ||||| || ||| Sbjct 16999 CTAAACATTCTAATAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAAT 16940 Query 92967 TCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 ||||||| | |||| ||| |||| | ||| | || |||||||| || | | Sbjct 16939 TCATTCCAATAAGATC-ACATGGTAATGATTCGCAGATAAATGATCTTTCTACAT--CTA 16883 Query 93024 CGGCTTCTTTCAAGATTTCTAT-TACTCTACTATTT--GGTGGTTTTTGTACGACATAAT 93080 | |||||||| | || | ||| |||| ||| ||| ||| ||| | | | | || Sbjct 16882 CAGCTTCTTTAACTATAT-TATGTACT--ACTTTTTCGGGTAATTTATTTTCTAATAAAC 16826 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 | |||||||| || ||| || || || || ||||| |||| ||||| ||||| | Sbjct 16825 TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTAC 16766 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 | || || | || | | | |||| |||| ||| || |||| | |||||| | Sbjct 16765 TAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTC 16706 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA---TTTG 93257 || ||| | |||||||| || ||| || ||||| | ||| |||||| || | Sbjct 16705 CACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAGAGTTCG 16646 Query 93258 CGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 | |||| |||||||| ||||| ||||| || || | | ||||| Sbjct 16645 TGTCATTA------ATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATAT 16592 Query 93318 TTTCGATAGCGTTAAATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 |||| ||||| | ||||| | ||||| | | | |||| || || |||| || Sbjct 16591 TTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTC--ATCTTTAATATAATTATCAAT 16534 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 |||| | || |||| ||||||| ||| || | || || || || || || Sbjct 16533 CAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTT 16474 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGAT----TTTCATTGA 93491 | | ||||| | || || |||||| |||| || ||| |||| |||| | Sbjct 16473 TTTTGCTTCAGCAATTTGTACTTCTCTCAAAAA---CT-TACAAGATAAATTTTCTAACA 16418 Query 93492 CTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCAT 93551 | || ||||| ||||||||||| ||||| | ||| ||||| ||||||||||||| | Sbjct 16417 CAATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGT 16358 Query 93552 CTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA 93611 |||| | | || |||| || ||| | || | ||| | |||||| ||||||||| Sbjct 16357 CTTTTAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAA 16298 Query 93612 ACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 | || |||||||||||||| || | |||||| | || ||||| ||| ||| Sbjct 16297 AAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556840036052920