Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq483 179 7e-40 seq3 107 4e-18 >seq483 Length=14038 Score = 179 bits (198), Expect = 7e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| ||||| ||||| |||||||||||||| | | || || || ||| Sbjct 5920 AAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCCGTCT 5861 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || || || || || || || || | ||||||||| || |||||||| ||||| |||||| Sbjct 5860 TCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 5801 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || ||||| || || || ||||||| |||||| ||||||||||| |||||| Sbjct 5800 TGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAATGGTT 5741 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | |||||| ||||| |||||||| Sbjct 5740 TTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 179 bits (198), Expect = 7e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| ||||| ||||| |||||||| ||||| || | || || |||||| Sbjct 6148 AAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCT 6089 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || ||||| || || | ||||||||| || |||||||| ||||| |||||| Sbjct 6088 TCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 6029 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || ||||| || || || || |||| ||||||||||||||| || |||||| Sbjct 6028 TGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATGGTT 5969 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| | || || ||||| || ||||| Sbjct 5968 TTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 174 bits (192), Expect = 3e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||| ||||||| | | | || || ||||||| ||||| |||||||||||||| || Sbjct 6398 TTAAATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTA 6339 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || | || || || ||||| || || || || || || || | ||||||||| || Sbjct 6338 ATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATC 6279 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 |||||||| ||||| |||||||| || || ||||| || || || ||||||| ||| Sbjct 6278 TGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGA 6219 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| |||||||| || |||||||||||||| | || || ||||| || ||||| Sbjct 6218 TTCCACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 131 bits (144), Expect = 3e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| ||||| ||||| |||||||| ||||| || | || || || ||| Sbjct 5692 AAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCGTCT 5633 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || || || || || || || || | ||||||||| || |||||||| ||||| |||||| Sbjct 5632 TCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 5573 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || ||||| || ||| || ||||| | || || ||||||||||| || || Sbjct 5572 TGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCAACTTCCAAGGTAATAGTC 5513 Query 68430 TTTCC 68434 || || Sbjct 5512 TTACC 5508 >seq3 Length=82673 Score = 107 bits (118), Expect = 4e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || | | ||| || ||||| | ||| || ||||||||||| || ||||| || Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||| || || || || || ||||| | || || || || || || Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||| |||||||| || | || || || || | || || || || Sbjct 24820 AATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCAC 24879 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | ||| || ||||| || || | ||||| || || || |||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCATT 24928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921588035004760