Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq23 114 3e-20 >seq23 Length=57594 Score = 114 bits (126), Expect = 3e-20 Identities = 232/342 (68%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 68409 GCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCG 68468 || ||||| || || || | ||||| ||| |||||||||||||||| ||||||||||| Sbjct 43845 GCTTCTTCTTCTGAATTATTTGGAAGAGTACAAGAAATTCCTCAGAATGAAAATACTCCT 43904 Query 68469 TTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAAT 68528 |||| ||| ||||| | | |||| || || || ||| || || ||| Sbjct 43905 TTTTTTCCCATTTCTCCTTATGCTATTGCTAAACAATATGCACATTTCATTACTATCAAT 43964 Query 68529 TACCGTGAGTCGTATAACATGTATGTATGCAACTCG-ATTTGTTTCAATCACGAGAGTCC 68587 || | || || || || |||| | | || | | | |||| || ||||| || ||||| Sbjct 43965 TATAGAGAATCATACAATATGTTT-TGTGTTAATGGTATTTTATTTAATCATGAAAGTCC 44023 Query 68588 CAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAA 68647 | ||||| | || || ||||| ||||| || || | | || || |||| || Sbjct 44024 TAGAAGAGGAGAAACTTTTGTTACTCGAAAAATTACAAAAGGAATAGCCAAAATTTGTAA 44083 Query 68648 TGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGC 68707 | | ||||| || || | | || |||||||||| | |||||||||||| | || Sbjct 44084 AAATATAGAAAAGTGTATTACTTTAGGAAATATAGATGTATATAGAGATTGGGGACACGC 44143 Query 68708 GAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGA 68749 || ||||| ||| | || |||| | ||||| |||||||| Sbjct 44144 TAAAGATTATGTACATGCGATGTATCTAATGCTTCAACAAGA 44185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102837848271050