Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq483 150 1e-31 >seq483 Length=14038 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||||||||| || | ||| || ||||| || ||||||||||| Sbjct 6163 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 6104 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||||||| || || | || || | ||||| || |||| Sbjct 6103 AAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGA 6044 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||| |||||| |||| |||||||| |||||| Sbjct 6043 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACT 5984 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || || | ||||| || |||||||||||| Sbjct 5983 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCATA 5936 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||||||||| || | ||| || |||||||| ||||||||||| Sbjct 6391 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGAT 6332 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| |||||||| ||||| | || || | ||||| || |||| Sbjct 6331 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 6272 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||| |||||| |||| ||||| || ||| || Sbjct 6271 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCACT 6212 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || || | ||||| || |||||||||||| Sbjct 6211 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCATA 6164 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||||||||| || | || || ||||| || ||||| ||||| Sbjct 5935 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAAT 5876 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| |||||||| ||||| | || || | ||||| || |||| Sbjct 5875 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 5816 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||| || ||| |||| ||||| || ||| || Sbjct 5815 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACT 5756 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||||||||| || || | || || || ||||| |||||| Sbjct 5755 TCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCATA 5708 Score = 113 bits (124), Expect = 3e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||||||||| || | ||| || ||||| || ||||||||||| Sbjct 5707 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 5648 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| |||||||| ||||| | || || | ||||| || |||| Sbjct 5647 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 5588 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||| || ||| | || ||||| || || || Sbjct 5587 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCAACT 5528 Query 15130 TCTAAGGTAATGGTTTTACCTG 15151 || |||||||| || ||||||| Sbjct 5527 TCCAAGGTAATAGTCTTACCTG 5506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357379006902155