Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 145 7e-30 seq444 125 6e-24 seq483 109 5e-19 >seq3 Length=82673 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | ||||| |||| |||| ||| ||||| ||||||||||| ||||| Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | |||| ||||| |||||||||||||| || |||| ||||| ||||| || || || Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||||||||| |||||||||||||| ||| | ||| | | || | ||| || Sbjct 24820 AATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCAC 24879 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | ||||| ||||||| || || ||||| |||||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCAT 24927 >seq444 Length=15175 Score = 125 bits (138), Expect = 6e-24 Identities = 969/1545 (63%), Gaps = 44/1545 (3%) Strand=Plus/Minus Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 ||||| || |||||||||| ||||||| ||| || || || | ||| ||||||||| | Sbjct 5999 GAAACATATCATTTGATGTCCCAAAAATATTTTACCCATGCTACTCCGACTTTGTTCAAC 5940 Query 123036 GCCGGCACG--AAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACA 123093 |||| || ||| || || ||||||| || ||||| | || | | || Sbjct 5939 TCCGGAACTCCAAGA--CCACAAATGTCTTCTTGCTTTTTATTGTCCATTCAGTCCGATT 5882 Query 123094 GCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCG 123153 ||| ||||| | ||||||||| | || || ||||| |||| | || | Sbjct 5881 CCATTGAAGGTATTTTTGAAACTTTAAAGCAATGTGCACTGATTAGCAAAACAGCAGGAG 5822 Query 123154 GCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG--CATCAGAAGCACCGA 123211 | || || || ||||| || |||||||| | || | ||| ||| | ||| | Sbjct 5821 GTATTGGTGTAGCAGTGCAAGATGTAAGAGGTCAA--AATTCTTACATTAGAGGAACCAA 5764 Query 123212 CGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGT 123271 ||||| || ||||| | | ||| | |||| | ||| || | | | | || Sbjct 5763 CGGAAATTCCAATGGGCTTATACCTATGTTAAGAGTGTTTAATGACACTGCTAGATATGT 5704 Query 123272 CGACCA---GGGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGT 123328 || || |||||| ||| | ||||| | | || || ||| | ||||||||||| Sbjct 5703 AGATCAAGGGGGCGGAAAAAGAAAAGGTTCTTTTGCAATTTATATTGAACCGTGGCATTC 5644 Query 123329 TGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCG 123388 ||||| | || |||||| |||| | | ||| || |||||| | ||| | Sbjct 5643 AGATGTATTTGAATTTTTAGATTTGAGAAAAAACCACGGAAAAGAAGAATTAAGAGCAAG 5584 Query 123389 CGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGG 123448 ||||| || || ||| | ||| | || ||| | |||||| | | |||||||| | Sbjct 5583 AGATTTATTTTATGCTCTCTGGATTCCTGATCTCTTTATGAAAAGAGTAAAAGAAAATAA 5524 Query 123449 CGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCA 123508 | ||| | | |||||||| | ||||| || ||||| || | || | | Sbjct 5523 AGAATGGACTTTAATGTGTCCTAACGAATGTCCTGGTTTGAGTGAAACCTGGGGAGAAGA 5464 Query 123509 GTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAG--GTTCCG 123566 ||||| | || ||| | |||| || ||||| | ||| | | || || Sbjct 5463 ATTTGAAAAATTATACACAAAATATGAAGAAGAAGG--ATTAGGAAAAAGAACAGTACCA 5406 Query 123567 GCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTAC 123623 || | ||||| | ||| ||| | ||| ||| | ||||| ||||| || || Sbjct 5405 GCTCAAGATTTATGG---TTTGCCATTTTACAAAGTCAAATAGAAACAGGAACCCCATAT 5349 Query 123624 ATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAA 123683 ||| | || ||||| || || ||| ||| ||||||| ||||||||||| || ||| Sbjct 5348 ATGTTATATAAAGATGCTTGTAACTCCAAATCCAATCAACAAAACTTGGGAACTATTAAA 5289 Query 123684 TGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGT 123743 ||||| ||| | |||| ||||||| | ||||| | | | | |||| ||||| || Sbjct 5288 TGTAGCAATTTATGCTGCGAAATTGTAGAATATACATCTCCAGGGGAAGTAGCCGTTTGC 5229 Query 123744 AATTTGGCTTCGAT----TTGCGTGAA-TCGTTG-CGTCGAAAACGGCGCTTTTAATTTC 123797 ||||| ||||| || || || || | || | | ||||| | ||| ||||| Sbjct 5228 AATTTAGCTTCTATTGCCTTATGTAAATTTGTAGATATGGAAAAAAGACAATTTGATTTC 5169 Query 123798 CAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTT 123857 ||| || | || || | || | | || ||||| | ||||| || || Sbjct 5168 AAAAAACTTTATGATATTACCAGAATTATTACAAGAAATTTAGATAAAATAATAGAAAGA 5109 Query 123858 AATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTG 123917 |||| |||||| | | ||||| | || ||| ||| ||||| | ||| | Sbjct 5108 AATTATTATCCAGTTAAAGAAGCCAAAGTTTCAAATCATCGACATAGACCAATTGGAATT 5049 Query 123918 GGCATTCAAGGGTTGGCCGACGCGTT--TGTAATGCTGCGCATGCCGTACGAAAGCGACG 123975 || ||||||| ||||| ||| | || ||| || || | || || ||| |||| Sbjct 5048 GGTGTTCAAGGATTGGCTGACACCTTCATGTTAT--TGAGATATCCATATGAATCGGACG 4991 Query 123976 AAG-CAAAG--TTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGG 124032 | | ||||| ||| || | ||| ||||| || |||| | |||||||| | Sbjct 4990 ATGCCAAAGAATTG---AACAAAAGAATTTTTGAAACTATGTATTTTGCAGCTTTGGAAG 4934 Query 124033 CGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGA 124092 | ||| | || || |||| || | || |||| | || ||||| || | Sbjct 4933 AATCCGTAGAATTGGCTAAGGTTCATGGAACCTATGAAACATTTAAAGGAAGCCCAGCAA 4874 Query 124093 GCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACA-CCGACA--AATTTGTGGGACT 124149 || |||||||||||||| ||||||||||||| | | || | || | ||| ||| Sbjct 4873 GCAAAGGTATTTTGCAGTTTGACATGTGGAATGTAAAAGTAGATAATAAATATTGGAACT 4814 Query 124150 GGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGT 124209 || | ||||||||| ||| | || ||||| | || || | || | || Sbjct 4813 GGGATGAATTAAAACAAAAAATAATCAAACATGGTTTAAGAAATTCTTTATTATTAGCTC 4754 Query 124210 ACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCA 124269 ||||| ||||| | || | |||||||||||||| || ||||| || || || | || Sbjct 4753 CTATGCCTACGGCTTCTACATCACAAATTTTAGGAAATAATGAATCTTTTGAACCATACA 4694 Query 124270 CTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATT 124329 ||| ||| | || || |||| ||| || || || || |||||| ||| Sbjct 4693 CTAGCAACATTTATTACAGAAGAGTATTAAGTGGAGAATTCTTTGTAGTAAATCCACATC 4634 Query 124330 TGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATG-CGCAACGAAATTATT 124388 || || | || || | | | | | | |||||| | ||| |||| || | ||| Sbjct 4633 TGTTGAAAGATTTATTTGATAGAGGTCTATGGGATGAAGATATGAAACAAC-AACTGATT 4575 Query 124389 GCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAACTGTAC 124448 || | ||| || || ||| ||| | || || || | | ||| || ||||| Sbjct 4574 GCTCACAATGGAAGTGTTCAGTATATCAGTGAAATACCTGATGATTTAAAGGAATTGTAC 4515 Query 124449 AAAACCGTGTGGGAAATGAAA-AATAAACGATTAATTGAAATGGC 124492 ||||| || |||||||| ||| || ||| ||| ||||| ||||| Sbjct 4514 AAAACTGTCTGGGAAATAAAACAAAAAAATATT-ATTGATATGGC 4471 >seq483 Length=14038 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || || |||| || | || ||||| |||||||| || ||||| Sbjct 6394 ATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCA 6335 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||||||||||||| || | || |||| ||| || || || Sbjct 6334 GATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 6275 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||| ||||| || | ||| | ||||| || || || Sbjct 6274 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCC 6215 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || |||| ||||| || ||||||||||| Sbjct 6214 ACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| || ||||| |||||||| | ||| | Sbjct 5923 CTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCCG 5864 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||||||||| || | || |||| ||| || || || ||||| |||||||| Sbjct 5863 TCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTG 5804 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| || | ||| | ||||| || || || ||||| | |||| Sbjct 5803 TCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAATG 5744 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || || || ||||| ||||| Sbjct 5743 GTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| || ||||| || ||||| | ||| | | Sbjct 6151 CTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCA 6092 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| ||| || || || ||||| |||||||| Sbjct 6091 TCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTG 6032 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| || | ||| | || || || || || ||||| | |||| Sbjct 6031 TCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATG 5972 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| || ||||||||||| Sbjct 5971 GTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451986345930680