Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq483 100 2e-16 >seq483 Length=14038 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || || || || ||| ||||||||| || || ||||| | ||| | | | || ||| Sbjct 6373 ACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCC 6314 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||| ||||| | || ||||| | || | ||||||||||| Sbjct 6313 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 6254 Query 39631 ATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 ||||| |||| || || || ||||||| |||||| ||||| ||||| |||| Sbjct 6253 ATTTTGGCCTTTACATTTTCAATA--GTGTCTGATGATTCCACTTCCAATGTAATGGTTT 6196 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| ||||| ||||| || ||||| Sbjct 6195 TTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || || || |||||| |||||| || || |||||||| ||| | | | || ||| Sbjct 5917 ACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCCGTCTTCC 5858 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||| ||||| | || ||||| | || | ||||||||||| Sbjct 5857 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 5798 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| || | | | | ||||||| |||||| ||||| ||||| ||||| Sbjct 5797 ATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAATGGTTTTT 5738 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || ||||| |||||||| Sbjct 5737 CCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || || || || ||| |||||| || || || ||||| | ||| | | |||| || Sbjct 6145 ACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCTTCT 6086 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| ||| |||| ||||| | || ||||| | || | ||||||||||| Sbjct 6085 AATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 6026 Query 39631 ATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 ||||| |||| || || || || |||| ||| || ||||| ||||| |||| Sbjct 6025 ATTTTGGCCTTTACATTTTCAATA--GTATCTGATGATTCTACTTCCAATGTAATGGTTT 5968 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| ||||| ||||| || ||||| Sbjct 5967 TTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347356971269639