Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq444 132 6e-26 >seq444 Length=15175 Score = 132 bits (146), Expect = 6e-26 Identities = 884/1404 (63%), Gaps = 28/1404 (2%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 |||||| ||| ||||| | ||||| |||||||| |||||||||| || || ||||| Sbjct 4671 TCTTCTGTAATAAATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTG 4730 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 || || || || || ||||| || || | || | | || | | ||| | || | Sbjct 4731 TGATGTAGAAGCCGTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGAT 4790 Query 106045 GATGCGTTCCTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACA 106100 || || || | ||||||||| || || | | ||| || |||| ||| Sbjct 4791 TATTTTTTGTTTTAATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCC-ACA 4849 Query 106101 TATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTT 106160 | ||||| || | | |||| | | || || | |||||| ||||||| || | Sbjct 4850 TGTCAAACTGCAAAATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCAT 4909 Query 106161 GGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 106219 | | | ||||||||| || | | | |||| | ||| |||||| |||||||| || Sbjct 4910 GAACCTTAGCCAATTCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATT 4968 Query 106220 CGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACA 106279 | |||| || ||||| || || || ||| ||| || | | || || || Sbjct 4969 CTTTTGTTCAATTCTTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTG 5028 Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGCG 106337 || || | ||||||||||| | ||||| ||||| ||||| ||| || |||| || Sbjct 5029 TCAGCCAATCCTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCT 5088 Query 106338 CAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| ||| |||||| ||||||| || || | | | || |||| | |||| ||| Sbjct 5089 ---TCTTTAACTGGATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATT 5145 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 | || || |||| |||||||| ||||||| | | || || ||| | || Sbjct 5146 CTGGTAATATCATAAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTA 5205 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 | ||| || || || ||||||||||| || || | | ||| || |||| | Sbjct 5206 CATAAGGCAATAGAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACA 5265 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| || || ||| || ||||| || ||||| || | ||| || || | Sbjct 5266 ATTTCGCAGCATAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAG 5325 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTT--GAGAA 106634 || || ||||| || || | ||| || || || || || || | | |||||| | || Sbjct 5326 TTACAAGCATCTTTATATAACATATATGGGGTTCCTGTTTC--TATTTGACTTTGTAAAA 5383 Query 106635 TTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694 | || ||| | ||| |||||||| | || | ||| || | || || | Sbjct 5384 TGGCAAACCATAAATCTTGAGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATT 5443 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 ||||||| | |||||| || || ||| | || | ||| || | || | Sbjct 5444 TTGTGTATAATTTTTCAAATTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAG 5503 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 |||| | | || ||||| | || | || | ||||| || || || ||||||| Sbjct 5504 GACACATTAAAGTCCATTCTTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCC 5563 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 | || | |||| | |||||| | ||||| | || ||||| || || | Sbjct 5564 AGAGAGCATAAAATAAATCTCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAAT 5623 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 106930 | | || || | | ||| | ||||| || |||| ||| | ||| | ||| || | Sbjct 5624 CTAAAAATTCAAATACATCTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTC 5683 Query 106931 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 ||| ||||| |||||| |||||| | || ||| | ||||| || | | ||| || Sbjct 5684 TTTTTCCGCCC-CCTTGATCTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGT 5742 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 107050 |||| |||| || | || || || || | ||| ||| || | |||| ||||| Sbjct 5743 ATAAGCCCATTGGAATTTCCGTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTACATCT 5802 Query 107051 TGGATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | ||| | |||||||| || || || || | ||||| | | | | ||| Sbjct 5803 TGCA-CTGCTACACCAATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGT 5861 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG-CGATAAGGAAGCAACTGGACATCT 107168 | || | ||||| | || || || || ||| | |||| |||||| ||||| | Sbjct 5862 TTCAAAAATACCTTCAATGGAATCGGACTGAATGGACAATAA-AAAGCAAGAAGACATTT 5920 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGG 107227 | |||||||| || || | ||||| | || || || || || | || ||| |||| Sbjct 5921 GTGGTCTTGGAGTTCCGGAGTTGAACAAAGTCGGAGTAGCATGGGT-AAAATATTTTTGG 5979 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||| ||||| | ||||| || || ||| || || || | Sbjct 5980 GACATCAAATGATATGTTTCCAATGCTCTATCAACATCATCAATGTGAATACCAATAGAA 6039 Query 107288 ACACGCATAAACATGTATTGGGGT 107311 || | ||| |||| | ||| ||| Sbjct 6040 ACTCTCATCAACAAATGTTGTGGT 6063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958801090920