Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq444 441 8e-119 seq64 342 6e-89 >seq444 Length=15175 Score = 441 bits (488), Expect = 8e-119 Identities = 1130/1704 (66%), Gaps = 48/1704 (3%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||||||||| |||||||| || |||||||| | |||| ||||| ||| || Sbjct 4443 CTGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTC 4502 Query 47183 CCATACTGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAG 47238 ||| || ||||| || |||| ||||| || || || | | | | || |||| | Sbjct 4503 CCAGACAGTTTTGTACAATTCCTTTAAA-TCATCAGGTATTTCACTGATATACTGAACAC 4561 Query 47239 ATCCTCCgttttctataattttgttttttaat-tcatttgaccaaagttttcgttcagtt 47297 ||| || | || | || ||| ||| || || | ||| || || ||| | Sbjct 4562 TTCCATTGTGAGCAATCAGTT-GTTGTTTCATATCTTCATCCCATAGACCTCTATCAAAT 4620 Query 47298 aatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTA 47357 || ||| || ||||| ||||| || | ||||||||| || |||||| | | | Sbjct 4621 AAATCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAA 4680 Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417 || || || || || |||||||| | ||||||||||||||| |||||||| | || || Sbjct 4681 TAAATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAA 4740 Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNN 47477 || |||||||| | || | |||||| |||||||| |||| ||| ||| | Sbjct 4741 GCCGTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGT 4800 Query 47478 NNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCATATTGA 47534 | ||| | |||| | | | || | |||||||| | ||| | || Sbjct 4801 TTTAATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGC 4860 Query 47535 AGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCG 47594 | ||| ||||| ||| || || ||| |||||| ||| | || | | ||||| Sbjct 4861 AAAATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCC 4920 Query 47595 AGTTC-ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | ||| || || ||||||| || | |||| || |||||||| ||| || |||| | Sbjct 4921 AATTCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCA- 4978 Query 47654 ATTCCTTG-CTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATC 47712 |||| ||| | || |||||| | ||||| || || || ||||||| Sbjct 4979 ATTCTTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATC 5038 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 ||||||||||||| |||||||||||||| | ||| |||| | |||||| | || Sbjct 5039 CTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTG 5098 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | ||| | ||||| ||||||| || | ||| || Sbjct 5099 GATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCAT 5158 Query 47833 TTAATTTATTAAAATCAAACT-TGTTATTT--ATA---ACAAACCTAT-TAAGTGCTATA 47885 | ||| || |||||||| | | || ||| ||| ||||| || |||| || ||| Sbjct 5159 AAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAG-GCAATA 5217 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA-CA 47944 || |||| ||| || || ||||| || |||| ||||||| || ||||| ||| || Sbjct 5218 GAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTC-GCAGCA 5276 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCG 48002 || ||| | |||||| ||||| ||||| ||||| ||||| ||| |||||| || Sbjct 5277 TAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGA--GTTACAAGCA 5334 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || || || | |||| | || ||||| |||||||| ||| || | || | ||| Sbjct 5335 TCTTTATATAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCAT 5394 Query 48063 ACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTATTA-----TCATGTTCGTATTTAGTA 48116 | | || | ||| || | | ||| ||| || || | ||| ||||| || Sbjct 5395 AAA-TCTTGAGCTGGTA---CTGTTCTT--TTTCCTAATCCTTCTTCTTCATATTTTGTG 5448 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || |||||||| || || | | | || ||||||||||| ||||||||| Sbjct 5449 TATAATTTTTCAAATTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACAC 5508 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || || | ||| || | || | ||||||||| ||||||| | ||| || ||||| ||| Sbjct 5509 ATTAAAGTCCATTCTTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGA 5568 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| || | ||||| |||||| || || || || | | || | | Sbjct 5569 GCATAAAATAAATCTCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAA 5628 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | || ||| | |||||| ||||| | ||| ||||| | |||| || ||| Sbjct 5629 AATTCAAATACATCTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTT 5688 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| ||||| | ||| | ||||||||||| || | || Sbjct 5689 CCGCCCCCTTGATCTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGC 5748 Query 48417 CCATTTGATATACCATTGGTTCCCGAAAT---ATAACTTCCACTAGCTCTTATATTACTA 48473 ||||| || | || |||||||| ||| | || || || |||||| || Sbjct 5749 CCATTGGAATTTCCGTTGGTTCCTCTAATGTAAGAATTTTGAC---CTCTTACATCTTGC 5805 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 | || | ||| ||||| ||||| |||| || || ||||| | || | || ||| Sbjct 5806 ACTGCTACACCAATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCA 5865 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 |||| ||||| || ||| || |||| ||| ||| ||||||||| || Sbjct 5866 AAAATACCTTCAATGGAATCGGACTGAATGGACAATAAAAAGCAAGAAGACATTTGTGGT 5925 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 |||||| || || || || || |||| ||||| |||| |||| | || | | Sbjct 5926 CTTGGAGTTCCGGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATC 5985 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACG 48712 || | ||||||||| | | ||| | ||| || || || ||||| ||||| || | Sbjct 5986 AAATGATATGTTTCCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCT 6044 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||| |||| || ||| ||||| || || ||||||||||| ||| || | ||| ||| | Sbjct 6045 CATCAACAAATGTTGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCT 6104 Query 48773 TTCCAATGTTTTAAAACCAAAATA 48796 ||| || ||||| ||||||||||| Sbjct 6105 TTCTAAAGTTTTGAAACCAAAATA 6128 >seq64 Length=40286 Score = 342 bits (378), Expect = 6e-89 Identities = 602/858 (70%), Gaps = 27/858 (3%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| ||||||||| || ||||||||||||||||||||||| |||||||| | Sbjct 17118 CATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 17059 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 ||| || ||| ||||| || |||||| ||||| ||| | | | |||| | | || Sbjct 17058 TAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGAGCAGCC 16999 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTT-CATCATATCAC 18832 ||| |||||||||| | ||| || ||||||| ||||||| ||| ||| | ||| Sbjct 16998 TAAACATTCTAATAGTCG---ATCAGCAACAAATTCAATATAT-TGTGACATTA-ATCTG 16944 Query 18833 -AATTCATTCCTATTAATTTAACA-GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890 |||||||||| || || | ||| |||| || || | |||| | ||||| || Sbjct 16943 GAATTCATTCCAAT-AAGATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATC 16885 Query 18891 TACTGCCTCTGA---TATAATAGATACAACTCTATCT--TCATTAGGAGGGTATAGAAGA 18945 ||| || ||| |||| || ||| ||| | || | ||| | | || | | Sbjct 16884 TACAGCTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTT--ATTTTCTAATAAA 16827 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 || |||| ||||| |||||| || | ||| || |||||||| ||||||||| Sbjct 16826 C---TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCA 16770 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| ||| || | ||| |||| | |||||| |||||||| || | | ||| Sbjct 16769 TTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAA 16710 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 |||| ||| | |||||||| || ||| ||||| | |||||| || || | Sbjct 16709 CTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAG-A 16651 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 | || | | || ||||||||| |||||| || || ||||||||| || || Sbjct 16650 GT-TCGTG-TCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATA 16593 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 | || |||| || ||||| || | | ||| || |||||||| ||| ||| ||| Sbjct 16592 TTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAATC 16533 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 || |||||||| |||||||||| |||||||||| ||| |||||||| ||||| | Sbjct 16532 AACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTT 16473 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC-AAATTTTCATTAACTAT 19364 ||||||| | || |||||||| || ||||| ||| | | |||||||| || || Sbjct 16472 TTTGCTTCAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACACAAT 16414 Query 19365 TCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGT 19424 |||||||||||||||||||||||| || ||||| || || |||||||| |||| | Sbjct 16413 TCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTT 16354 Query 19425 TAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 ||| || | |||| || | ||| |||| ||||| | ||||||| | ||||||||||| Sbjct 16353 TAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGA 16294 Query 19485 AGCCTCTGCTTTTTTATA 19502 ||| |||||||||||||| Sbjct 16293 AGCTTCTGCTTTTTTATA 16276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087840368120