Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 187 2e-42 seq483 179 3e-40 >seq3 Length=82673 Score = 187 bits (206), Expect = 2e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||||| ||| | |||||||| || | |||||||||||||| ||||||||||| | Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | |||| || ||| |||||||| || || |||||||| || ||||| ||||| || || Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||||||||| |||||||||||||| ||| ||| |||| | | | ||| | ||||| Sbjct 24820 AATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCAC 24879 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || | ||||| |||||||| || || ||||| || ||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCAT 24927 >seq483 Length=14038 Score = 179 bits (198), Expect = 3e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | ||||||||| || | ||| ||||||||||| || |||||||| | Sbjct 6393 TTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAG 6334 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || |||||||| || || ||||| || || | |||||||| || | Sbjct 6333 ATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTG 6274 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| ||||| ||||| |||||| |||| | |||||| || | ||||| Sbjct 6273 GAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCA 6214 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || | ||||| || ||||| ||||| || || || ||||| Sbjct 6213 CTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | ||||||||| || | ||| |||||||| || || |||||||| | Sbjct 6163 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 6104 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || ||||| || || ||||| || || | |||||||| || ||| Sbjct 6103 AAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGA 6044 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| ||||| |||||| |||| | ||| || || | ||| ||| Sbjct 6043 ATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACT 5984 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||||| || ||||| ||||| || || || ||||| Sbjct 5983 TCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 134 bits (148), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | ||||||||| || | ||| |||||||| || || |||||||| | Sbjct 5707 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGAT 5648 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || |||||||| || || ||||| || || | |||||||| || ||| Sbjct 5647 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 5588 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| ||||| || ||| | || | ||||||||| | || ||| Sbjct 5587 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCAACT 5528 Query 101423 TC 101424 || Sbjct 5527 TC 5526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263993174931