Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq483 107 1e-18 seq3 82.4 6e-11 >seq483 Length=14038 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || || |||| ||| |||||||| || ||||||||||||| | ||| |||| Sbjct 6376 AAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTTCCGTCT 6317 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| || || || ||||| || | || |||||||| | |||| || || ||||| Sbjct 6316 TCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 6257 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || |||||| | | || ||||| | ||||| |||| ||||| ||| Sbjct 6256 TGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCACTTCCAATGTAATGGTT 6197 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||| || ||||| ||||| Sbjct 6196 TTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || || |||| ||| ||||| || || ||||||||||||| | ||| | || Sbjct 6148 AAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCT 6089 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || |||||||| || | || |||||||| | |||| || || ||||| Sbjct 6088 TCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 6029 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || |||||| | | || ||||| | || || |||| ||||| ||| Sbjct 6028 TGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATGGTT 5969 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||| || ||||| ||||| Sbjct 5968 TTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 >seq3 Length=82673 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| ||||||||||| || || |||| || ||||| || || || |||||| Sbjct 24737 TCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAAT 24796 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGA 48694 || | |||||| ||||| | |||| ||| ||||| || ||| ||| ||||| ||| Sbjct 24797 ATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAAT-TTTGGTTTTCACATT 24855 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || | |||||| || | || || ||||| || || || || || || Sbjct 24856 TTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCAC 24915 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 24916 AAAGATTTGCAT 24927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923750894509