Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq483 154 1e-32 seq3 105 6e-18 >seq483 Length=14038 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||||||||| ||||||||||| ||| |||| | ||| Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | || ||||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| | |||| | | ||||| ||| Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || | ||| | || ||||||||| ||||||| || Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGAAT 6394 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||||||||| ||||||||||| ||| ||| | ||| Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | || ||||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||| |||||| | |||| | | ||||| ||| Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| || | ||| | || ||||||||| ||||||| || Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGTAT 6166 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || ||||| || |||||||||||| ||| |||| | ||| Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | || ||||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| | |||| | ||||||||| Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| ||| | ||| | || ||||||||| |||| || || Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGGTAT 5938 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| |||||||| ||| | || ||||||||| ||| | |||||||| || ||| Sbjct 5565 AAAATCCAAGACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAA 5624 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||||| | |||| | | ||||| ||||| || |||||||| || | ||| Sbjct 5625 CAATTGGAAGACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACAC 5684 Query 28758 ATGGTATTAAGATTACGAGGAGGGAT 28783 | || ||||||||| ||||||| || Sbjct 5685 TTAGTTTTAAGATTAAGAGGAGGTAT 5710 >seq3 Length=82673 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| ||||| || || ||||| |||||||| || ||| ||| ||| || Sbjct 24931 AAAAATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCC 24872 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || | | | || | || ||||| || || || || | || || Sbjct 24871 AAATGATATTATTGAAAATGTGAAAACCAAAATTCAAGATAAGGAAGGCATTCCTCCTGA 24812 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||| ||| || | || ||||| || ||||||||||||||||| ||| | | ||||| Sbjct 24811 TCAGCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATTA 24752 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || |||||||||||||| ||||| | || || |||||||||||||| Sbjct 24751 CAATATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGG 24701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425389334275557