Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq444 327 6e-85 >seq444 Length=15175 Score = 327 bits (362), Expect = 6e-85 Identities = 1037/1575 (66%), Gaps = 72/1575 (5%) Strand=Plus/Plus Query 24985 ATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT-TATTG 25043 |||| | | || ||| ||||| | || ||||||||| || |||||||| || | Sbjct 4623 ATCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATA 4682 Query 25044 ATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATG 25103 | | ||| |||| ||||||||||| |||||||||||||||| ||||| || ||||| | Sbjct 4683 A-ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAG 4741 Query 25104 CTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTT 25163 | || ||||| |||| ||||| |||||||| ||||||| ||| | || | ||||| Sbjct 4742 CCGTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTT 4801 Query 25164 TTAATTTATCCCAATCTAAAT---TATTATCTAACTCGATATCGTTATCATATAAATCAA 25220 |||||| |||||| | ||| ||||||||| | | || || || |||| Sbjct 4802 TTAATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTC----CACATG--TCAA 4855 Query 25221 ATTGTAACAATCCACTTGCT-GCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTT 25279 | || || ||| | ||||| || || | | ||| ||| ||| | || | Sbjct 4856 ACTGCAA-AATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACC 4914 Query 25280 ATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTG 25339 | |||| ||| |||| || || || ||| |||||||| |||||||||| |||| Sbjct 4915 TTAGCCAATTCTACGGATTCTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTG 4974 Query 25340 TTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTC-CATTAAGGCGAACGTATCTGC 25398 || || || || | || | || | | || || || ||| ||| || || || Sbjct 4975 TTCAATTCTTTGGCATCGTC-CGATTCATATGGATATCTCAATAACATGAAGGTGTCAGC 5033 Query 25399 TAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGA 25458 ||||| ||||| || | ||||| ||| | |||| || ||| | | | |||| Sbjct 5034 CAATCCTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTT 5093 Query 25459 TGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTA 25518 |||||| ||||| | || || | ||||||| ||| || | || | || ||| Sbjct 5094 AACTGGATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAAT-TCTG-GTA 5151 Query 25519 TTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATCGT-TTATATCTCTTTTTACAAATT 25577 | || ||||||| || | || || || | || | | |||||||| Sbjct 5152 ATATC--------ATAAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATT 5203 Query 25578 TAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCAGA---ATATT 25634 || |||| || || || |||||||| ||||| ||| ||| ||| ||| ||||| Sbjct 5204 TACATAAGGCAATAGAAGCTAAATTGCAAACGGCTACTTC---CCCTGGAGATGTATATT 5260 Query 25635 CATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT--ATT 25692 | || ||| ||||| |||||| |||| || ||| | || | |||||| ||| Sbjct 5261 CTACAATTTCGCAGCATAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATT 5320 Query 25693 GCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATA 25751 || | | |||| |||||||||| | |||||| ||||||||||| |||||| | Sbjct 5321 ---TGGAGTTACAAGCATCTTTATATAACATATATGGGGTTCCTGTTTCTATTTGACTTT 5377 Query 25752 CTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTACT-TTCTTTA-CGAAGTTACCATCAGA 25809 |||||| ||| | ||| ||| |||| |||||| | | | || || Sbjct 5378 GTAAAATGGCAAACCATAAATCTTGAGCTGGTACTGTTCTTTTTCCTAAT--CCTTCTTC 5435 Query 25810 AACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCC 25869 || | || ||| | || ||||||||| | | ||| |||| | Sbjct 5436 TTCATATTTTGTGTATAATTTTTCAAATTCTTC-------TCCCCAG------GTTTCAC 5482 Query 25870 ATATTTATTGAGAATAATATTT-GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTT 25928 | | || | | | || ||||| | |||| ||| || ||||| | ||| Sbjct 5483 TCA---AACCAGGACATTCGTTAGGACACATTAAAGTCCATTCTTTATTTTCTTTTACTC 5539 Query 25929 TCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTT 25988 | | |||||| | ||| |||||||| | ||||||||||||||||| ||||| | ||||| Sbjct 5540 TTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAATCTCTTGCTCTTAATTCTT 5599 Query 25989 CTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTA 26048 |||||||||| || ||| | | |||||| || ||||| | |||||| ||||| ||||| | Sbjct 5600 CTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACATCTGAATGCCACGGTTCAA 5659 Query 26049 AATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTT 26108 ||| || |||||| ||||||||||||||| || ||||||||||| ||||| ||||| | Sbjct 5660 TATAAATTGCAAAAGAACCTTTTCTTTTTCCGCCCCCTTGATCTACATATCTAGCAGTGT 5719 Query 26109 CATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT 26168 |||| || ||| | ||||| || | | ||| | ||| |||||| || | ||| | Sbjct 5720 CATTAAACACTCTTAACATAGGTATAAGCCCATTGGAATTTCCGTTGGTTCCTCTAATGT 5779 Query 26169 -TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | || || | ||| | ||| || | | ||| || || || || ||| | Sbjct 5780 AAGAATTTTGAC-CTCTTACATCTTGCACTGCTACACCAATACCTCCTGCTGTTTTGCTA 5838 Query 26228 ATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCC 26286 || |||||| | || || || || ||||| |||| ||| ||| | || Sbjct 5839 ATCAGTGCACATTGCTTTAA-AGTTTCAAAAATACCTTCAATGGAATCGGACTGAATGGA 5897 Query 26287 TAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGT 26346 |||||||| |||||||| | ||| | | ||||| || || || || ||||| || Sbjct 5898 CAATAAAAAGCAAGAAGACATTTGTGGTCTTGGAGTTCCGGAGTTGAACAAAGTCGGAGT 5957 Query 26347 AGCATGAGTATAATATCCTT--CAC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGAT 26403 |||||| ||| ||||| || || ||||| || ||| ||||| | || ||| | Sbjct 5958 AGCATGGGTAAAATATTTTTGGGACATCAAA--TG-ATATGTTTCCAATGCTCTATCAAC 6014 Query 26404 ATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTAC 26463 || | | | || |||||| ||| | | ||| || ||| |||| || | || Sbjct 6015 ATCATCAATGTGAATACCAATAGAAACTCTCATCAACAAATGTTGTGGTCTCTCTACTAT 6074 Query 26464 ATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATC 26523 || || | | || | |||||||||| ||||||||||||| || ||||||||||| Sbjct 6075 TTTGTTAT---TAATTCGTAACAAATAAGATCTTTCTAAAGTTTTGAAACCAAAATAATC 6131 Query 26524 ATGATTGAAATCTCT 26538 || ||| |||||||| Sbjct 6132 ATAATTAAAATCTCT 6146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253030800651725