Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq23 187 3e-42 >seq23 Length=57594 Score = 187 bits (206), Expect = 3e-42 Identities = 483/728 (66%), Gaps = 15/728 (2%) Strand=Plus/Minus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||| ||||| || |||||||||||||||| |||| || | |||||||| Sbjct 44207 AATAACAAAATCTTCAGGCTCGTCTTGTTGAAGCATTAGATACATCGCATGTACATAATC 44148 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTT 47915 | | || |||||||| || | | | |||| | |||||||| | | ||| | || | Sbjct 44147 TTTAGCGTGTCCCCAATCTCTATATACATCTATATTTCCTAAAGTAATACACTTTTCTAT 44088 Query 47916 ACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACG 47975 | || | | ||| || | || ||||||| || ||||| ||||||||||| || | Sbjct 44087 ATTTTTACAAATTTTGGCTATTCCTTTTGTAATTTTTCGAGTAACAAAAGTTTCTCCTCT 44028 Query 47976 TCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACG 48035 ||| ||| |||||||||||| | ||||||| || | |||| ||||||||| | Sbjct 44027 TCTAGGACTTTCATGATTAAATAAAATACCATTAACACAAAACATATTGTATGATTCTCT 43968 Query 48036 ATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATA 48095 ||| || | || | | |||| |||| |||| | ||||||||||| ||| | Sbjct 43967 ATAATTGATAGTAATGAAATGTGCATATTGTTTAGCAATAGCATAAGGAGAAATGGGAAA 43908 Query 48096 GAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGA 48155 ||||| || | || |||| ||| | ||||| || | ||| | | |||| | || Sbjct 43907 AAAAGGAGTATTTTCATTCTGAGGAATTTCTTGTACTCTTCCAAATAATTCAGAAGAAGA 43848 Query 48156 TGCTTGATAGA----TACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCA 48211 || | ||| | ||| | | || ||| |||| | | ||||| | | Sbjct 43847 AGCATTATAAAATTTTAC-ATTCTTAACTT--TACTCATTTTTATG----GCCTCTAATA 43795 Query 48212 CTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCT 48271 ||| | || |||||| | ||| | ||||||| || |||| ||||| ||| | Sbjct 43794 TTCTTAAAGTACCTATGCCCGTTGTTTCTGCAGTATATTCAGGCACTTCAAAACTAACTT 43735 Query 48272 TTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG-TTGAACCTGCTGAATAACC 48330 |||||||||| ||||| | | |||||| || |||| || |||| | | ||| Sbjct 43734 TTACATGACTTTGTGCTGCTAAATTATATATTTCATTAGGTTTGATTTCACAAATTAAAG 43675 Query 48331 CTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCATAAATG 48390 | || | ||| || ||| | || |||||||| |||| ||||| ||| | || Sbjct 43674 CACA-AATATTACTACTATCTAACACATCCCCATAATGTAATTCTAATTTCTCAAATATA 43616 Query 48391 TGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATAC 48450 ||||| |||| | |||||||| | || | | | | | |||||||| ||| Sbjct 43615 TGATCTATTCGAACTGTATTAAATGAACTACATCTTCTTATTACTCCATGAACAATATAA 43556 Query 48451 CCCTTTTCAAGAAGAAGTTCTGCTAAG-TATGAACCATCTTGTCCTGTAATACCAGTGAT 48509 || |||| | |||||| || ||||| || |||||||| ||||| || || ||| || Sbjct 43555 CCTTTTTTCAAAAGAAGCTC-ACTAAGATAAGAACCATCCTGTCCAGTTATTCCAAAAAT 43497 Query 48510 TAAAGCAA 48517 | ||||| Sbjct 43496 GAGAGCAA 43489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665469585377560