Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq444 158 1e-33 >seq444 Length=15175 Score = 158 bits (174), Expect = 1e-33 Identities = 848/1333 (64%), Gaps = 28/1333 (2%) Strand=Plus/Minus Query 75272 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||| ||||| | |||||||||| ||| || | || || || || || | || Sbjct 6002 TTGGAAACATATCATTTGATGTCCCAAAAATATTTT-ACCCATGCTACTCCGACTTTGTT 5944 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCG-CCAACAAGGAGG 75389 ||| | || || |||||||| || ||||| |||||| |||| | ||| || | Sbjct 5943 CAACTCCGGAACTCCAAGACCACAAATGTCTTCTTGCTTT-TTATTGTCCATTCAGTCCG 5885 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 | || || | ||||| | || |||| | | | | ||||| | || || || | Sbjct 5884 ATTCCATTGAAGGTATTTTTGAAACTTTAAAGCAATGTGCACTGATTAGCAAAACAGCAG 5825 Query 75450 GGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 | |||||||| | ||| | || ||||| |||| | || ||| ||| | || || Sbjct 5824 GAGGTATTGGTGTAGCAG-TGCAAGATGTAAGAGGTCAAAATTCTTACATTAGAGGAACC 5766 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || | || |||| |||| || ||| | | || ||||| | ||| || | ||| Sbjct 5765 AACGGAAATTCCAATGGGCTTATACCTATGTTAAGAGTGTTTAATGACACTGCTAGATAT 5706 Query 75569 GTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 ||| |||||| |||||| ||| || || | || | || | ||||| ||||| Sbjct 5705 GTAGATCAAG-GGGGCGGAAAAAGAAAAGGTTCTTTTGCAATTTATATTGAACCGTGGCA 5647 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | | ||| | | || || | || || || ||||| || | ||||| | Sbjct 5646 TTCAGATGTATTTGAATTTTTAGATTTGAGAAAAAACCACGGAAAAGAAGAATTAAGAGC 5587 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 |||||| | |||| | || |||||||| || || || ||||| | || | || Sbjct 5586 AAGAGATTTATTTTATGCTCTCTGGATTCCTGATCTCTTTATGAAAAGAGTAAAAGAAAA 5527 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 | ||||| || | | ||||| || | || ||| | || | ||| || Sbjct 5526 TAAAGAATGGACTTTAATGTGTCCTAACGAATGTCCTGGTTTGAGTGAAACCTGGGGAGA 5467 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACC 75864 || |||||| | |||||||| |||||||| || || || || || ||||| Sbjct 5466 AGAATTTGAAAAATTATACACAAAATATGAAGAAGAAGGATTAGGAAAAAGAACAGTACC 5407 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCT-CAAA-TCACAGACGGAGACTGGAACACCATAT 75922 ||| ||| | ||| || ||| | |||| ||| | | || || ||||| |||||| Sbjct 5406 AGCTCAAGATTTATGGTTTGCCATTTTACAAAGTCAAATA--GAAACAGGAACCCCATAT 5349 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||| | || || |||||||||||| || || ||| | || |||||||| || || Sbjct 5348 ATGTTATATAAAGATGCTTGTAACTCCAAATCCAATCAACAAAACTTGGGAACTATTAAA 5289 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 | ||| | ||| |||||| |||| || ||| | | || || |||||| Sbjct 5288 TGTAGCAATTTATGCTGCGAAATTGTAGAATATACATCTCCAGGGGAAGTAGCCGTTTGC 5229 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTAT 76102 ||||| || || || ||| | || | ||| || || | | ||||||| Sbjct 5228 AATTTAGCTTCTATTGCCTTATGTAAATTTGTAGATATGGAAAAAAGACAATTTGATTTC 5169 Query 76103 GAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGA 76162 |||||||| |||| || || | ||| |||| | |||| || | | | || || ||| Sbjct 5168 AAAAAACTTTATGATATTACCAGAATTATTACAAGAAATTTAGATAAAATAATAGAAAGA 5109 Query 76163 AATTTTTATCCCGTT-GAGACTGCGCGAAAG--TCTAATATGCGACACAGACCTATTGGT 76219 |||| |||||| ||| ||| || |||| || ||| ||||| ||||| ||||| Sbjct 5108 AATTATTATCCAGTTAAAGA---AGCCAAAGTTTCAAATCATCGACATAGACCAATTGGA 5052 Query 76220 TTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGAT 76279 | ||||||||||| | || || || || || | | || ||| ||| || || Sbjct 5051 ATTGGTGTTCAAGGATTGGCTGACACCTTCATGTTATTGAGATATCCATATGAATCGGAC 4992 Query 76280 GAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG 76339 || ||||| || |||| | || |||||||| |||||| ||| | |||| | Sbjct 4991 GATGCCAAAGAATTGAACAAAAGAATTTTTGAAACTATGTATTTTGCAGCTTTGGAAG-A 4933 Query 76340 AGTTGT-GAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 | || ||||||||| | | || || ||||||| |||||| | || || || Sbjct 4932 ATCCGTAGAATTGGCTAAGGTTCATGGAACCTATGAAACATTTAAAGGAAGCCCAGCAAG 4873 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AGCTCAACTA---CGACT 76454 | |||| | | |||||||| |||| |||| || ||| | | || || ||| Sbjct 4872 CAAAGGTATTTTGCAGTTTGACATGT-GGAATGTAAAAGTAGATAATAAATATTGGAACT 4814 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 |||||| | || || || | | | ||| | | || | | || | || | Sbjct 4813 GGGATGAATTAAAACAAAAAATAATCAAACATGGTTTAAGAAATTCTTTATTATTAGCTC 4754 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 | ||||| || || || || ||||||| || || |||||||||| ||||||||||||| Sbjct 4753 CTATGCCTACGGCTTCTACATCACAAATTTTAGGAAATAATGAATCTTTTGAACCATACA 4694 Query 76575 CAACAAACATCTA 76587 | | ||||| || Sbjct 4693 CTAGCAACATTTA 4681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596547355411040