Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 seq483 170 3e-37 >seq3 Length=82673 Score = 178 bits (196), Expect = 2e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 193158 TGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGT 193217 ||||| |||| ||||| ||||| || || || | |||| ||||| || |||||| Sbjct 24725 TGCAACGTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCTTCCAATTGT 24784 Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 ||||| ||||| ||||||| ||| ||||||||||| || ||||| |||||||| |||||| Sbjct 24785 TTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTG 24844 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||||| | |||| |||| |||| | ||| ||||| || |||||||||||||| ||| Sbjct 24845 GTTTTCACATTTTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTT 24904 Query 193338 AGCGTTTTTACAAATATTTGCATTTT 193363 | ||| || ||||| ||||||||||| Sbjct 24905 AACGTCTTCACAAAGATTTGCATTTT 24930 >seq483 Length=14038 Score = 170 bits (188), Expect = 3e-37 Identities = 180/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| |||| | || | || || || | ||||| || || Sbjct 6173 AATTTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTT 6114 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || ||||| ||||| ||| |||||||||||||||||||| |||||||| ||||| Sbjct 6113 GTAATCAGATAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTG 6054 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||||| |||| |||| ||||||||| || Sbjct 6053 ATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGA 5994 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | || || ||||| || |||| ||||| || || |||||||| Sbjct 5993 TGATTCTACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| || || ||||| |||| | || | || || || | ||||| || || || Sbjct 6398 TTAAATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTA 6339 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 || ||||| ||||| || || ||||||||||| ||||| |||||||| |||||||| Sbjct 6338 ATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATC 6279 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || ||||||||||| ||||| ||||||| |||| |||| |||||| || || || Sbjct 6278 TGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGA 6219 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| | || || ||||| || |||| ||||| || || |||||||| Sbjct 6218 TTCCACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| |||| | || | || || || | ||||| || || Sbjct 5945 AATTTGCATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTT 5886 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || |||| ||||| || || ||||||||||| ||||| |||||||| ||||| Sbjct 5885 ATAATCCAATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTG 5826 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||||| || | |||| |||||| || || Sbjct 5825 ATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGA 5766 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | || || ||||| || |||| || || || || || ||||| Sbjct 5765 TGATTCCACTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| |||| | || | || || || | ||||| || || || || Sbjct 5710 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 5651 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| ||||| || || ||||||||||| ||||| |||||||| |||||||| || Sbjct 5650 GATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5591 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| ||||||| || | ||| |||||| || || | |||| Sbjct 5590 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCA 5531 Query 193311 ACTTCTAGAGTTATAGTTTTACCTG 193335 ||||| | || ||||| ||||||| Sbjct 5530 ACTTCCAAGGTAATAGTCTTACCTG 5506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899620854136560