Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq64 223 5e-53 seq483 168 1e-36 >seq64 Length=40286 Score = 223 bits (246), Expect = 5e-53 Identities = 568/849 (67%), Gaps = 31/849 (4%) Strand=Plus/Minus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| | ||| |||| || ||||||||||| ||||||| || || || | Sbjct 17106 TTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATAAG 17047 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAA 17982 || ||| || |||||| || ||| | | || |||| ||| | ||| Sbjct 17046 ATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGAGCAGCCTAAACATTCTAA 16987 Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG 18042 || || ||| || |||||||| | |||||||||||| || | ||||||| || | || Sbjct 16986 TAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCATTCCAATAAG 16927 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAAT--TCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | |||| | || |||||| ||||||| |||| |||| ||||| | | Sbjct 16926 ATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATCT--ACAGCTTCTTTAACT 16869 Query 18101 ATGTTTATTACCCTAGATTTT--GGCAATTTATTAATTATGTGATTATAATATAA--TAA 18156 || || ||| || |||| || |||||||| || | | || | |||| ||| Sbjct 16868 ATATTATGTAC--TACTTTTTCGGGTAATTTATT--TTCT---AATAAACTATACATTAA 16816 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| |||||| ||||| || ||||||||||| || ||||| |||||||| || | Sbjct 16815 ACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAGTGAG 16756 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | | |||||| | ||| || || | ||||| | | ||| | Sbjct 16755 TCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTCCACTAAATAG 16696 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 ||||| ||||| || || || | | ||||||||||||| || | || ||| Sbjct 16695 AATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAGAGT---TCGTG-TCAT 16640 Query 18337 TA-TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 || ||||||| ||||||| | ||| | | |||||| | || ||||||| Sbjct 16639 TAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATATTTTCAATAGCAT 16580 Query 18396 TAAACAAATC--ATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| |||| |||||| || |||||| |||||| | || || |||||| || Sbjct 16579 GAAATAAATTTAATCTTTCAGCTTC--ATCTTTAATATAATTATCAATCAACAAACTGTA 16522 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||| ||||| || |||| | ||||||||||||| ||||||| | | || || | Sbjct 16521 AGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCAGC 16462 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACC-AAATTCTCATTAACTATACCGTCAGCAG 18572 | ||| | || || |||| ||| | | ||||| || || || || ||| || Sbjct 16461 AATTTGTACTTCTCTCAAAAA-CTTACAAGATAAATTTTCTAACACAATTCCATCACTAG 16403 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 ||| ||||||||||| |||| || ||||||||||| ||||| || || | | ||| | Sbjct 16402 CTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAA--GTTTC 16345 Query 18633 AT--TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 || || | || ||| | || | ||||| |||||| | ||||||||||| | ||| || Sbjct 16344 ATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGC 16285 Query 18691 CTGTTTGTA 18699 | ||| || Sbjct 16284 TTTTTTATA 16276 >seq483 Length=14038 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||||||||| || |||||||| |||||||| ||||| ||| || Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | |||||| || || | |||||| ||||||||||| ||||| || Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || ||||| |||||||||||||| ||| Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGT 6164 Score = 152 bits (168), Expect = 8e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||||||||| || |||||||| |||||||| ||||| ||| || Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| || || || | ||||| ||||||||||| ||||| || Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || | || ||||| |||||||||||||| || Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6391 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || || ||||||||||| ||||| || ||||| ||| || Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| ||||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| || || || | ||||| |||||||||| |||||||| Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || ||||| |||||||||||||| ||| Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGGT 5936 Score = 123 bits (136), Expect = 4e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 || || |||||||| || ||||| || | ||||| | |||| || ||||| ||| Sbjct 5508 GGTAAGACTATTACCTTGGAAGTTGAGGCATCTGACACTATTGAGAATGTGAAGGCCAAA 5567 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || ||||| |||||||| || || ||||| ||||||||||| || | ||| || || || Sbjct 5568 ATCCAAGACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAA 5627 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | ||||| ||||||||||| ||||| || || ||||| | || | || ||| Sbjct 5628 TTGGAAGACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACTTA 5687 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 5688 GTTTTAAGATTAAGAGGAGGT 5708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731844710322800