Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq64 250 5e-61 seq483 203 6e-47 seq3 147 4e-30 >seq64 Length=40286 Score = 250 bits (276), Expect = 5e-61 Identities = 541/801 (68%), Gaps = 22/801 (3%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| || || | || ||| || |||||| ||||||| || | || | |||| Sbjct 17062 CTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAA-ACTTTTGAG 17004 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | |||| ||||| || ||| || |||||||||| |||||||||||||||| Sbjct 17003 CAGCCTAAACATTCTAATAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTG 16944 Query 49692 CAATTCATACCCAATAA-TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttc 49750 ||||||| ||||||| | | ||||||||| || |||||| | |||||| || Sbjct 16943 GAATTCAT-TCCAATAAGATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATC 16885 Query 49751 tacagcttgtttaattatcataattatattatttttt--gataatttatatt-taatatg 49807 |||||||| ||||| ||| || | || || ||||| | |||||||| || ||||| Sbjct 16884 TACAGCTTCTTTAACTATATTA--TGTACTACTTTTTCGGGTAATTTATTTTCTAATAAA 16827 Query 49808 attcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTC 49867 | ||| |||||||| |||||| || || || || || || ||| || ||||| Sbjct 16826 CT----ATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTC 16771 Query 49868 ATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAA 49927 |||||||||||| | ||| ||||| | ||||| | ||| || |||| ||| Sbjct 16770 ATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAA 16711 Query 49928 ACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACAT 49987 ||| | | ||| | ||||| || ||||| ||| || | |||||| | ||| | Sbjct 16710 ACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAA--AA 16653 Query 49988 TAATT--TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGT 50045 | || | |||| || ||||| || ||||| |||||| ||||| | || |||| Sbjct 16652 GAGTTCGTGTCAT-TA--ATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGT 16596 Query 50046 ATATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNN 50105 |||||||| ||||| | |||||| | | ||||| Sbjct 16595 ATATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCA 16536 Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 || || ||| || |||| ||||| | | ||| | |||||| ||||| |||||||| Sbjct 16535 ATCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAAC 16476 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAA-CTAAATTCTCAGATAC 50224 | | ||||||| | | || ||||| || || | | ||| |||||| || | || Sbjct 16475 TTTTTTGCTTCAGCAATTTGTACTTCTCTCAA-AAACTTACAAGATAAATTTTCTAACAC 16417 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATC 50284 ||| |||||| ||||| || ||||| || || | || || |||||||| ||||| || Sbjct 16416 AATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTC 16357 Query 50285 TTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 ||||||| |||| || || | ||| | || ||||| | |||||| |||||||| Sbjct 16356 TTTTAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAA 16297 Query 50345 TGATGCTACGGATTTTTTATA 50365 || ||| | | ||||||||| Sbjct 16296 AGAAGCTTCTGCTTTTTTATA 16276 >seq483 Length=14038 Score = 203 bits (224), Expect = 6e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| ||||| || | ||||| ||| || |||||| Sbjct 6166 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 6107 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | |||| || |||||||| || |||||||||||||| |||||||| ||| Sbjct 6106 GATAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGT 6047 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| |||||||| |||| |||||| |||||| Sbjct 6046 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCT 5987 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||| || ||||||||||||| || || ||||| Sbjct 5986 ACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 199 bits (220), Expect = 8e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| ||||| |||||||| | ||||| ||| |||||||| Sbjct 5938 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCC 5879 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||| | | || ||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 5878 AATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5819 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| || ||||| |||| ||||| ||||| Sbjct 5818 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCC 5759 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||| |||||||| || |||| || |||||||| Sbjct 5758 ACTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 196 bits (216), Expect = 9e-45 Identities = 182/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||| || ||||| | | ||| ||||| ||||| || | ||||| ||| || ||||| Sbjct 6395 AATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATC 6336 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||| |||| | | || ||||||||||| ||||||||||||||||| |||||||| || Sbjct 6335 AGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGG 6276 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||||||||| ||||| ||||| |||||||| |||| ||||| ||||| Sbjct 6275 TGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTC 6216 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||| || ||||||||||||| || || ||||| Sbjct 6215 CACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| ||||| || | ||||| ||| || |||||| Sbjct 5710 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 5651 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | | || ||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 5650 GATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5591 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| || ||||| |||| || || | || Sbjct 5590 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCA 5531 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 ||||| | ||||| || ||||| Sbjct 5530 ACTTCCAAGGTAATAGTCTTACC 5508 >seq3 Length=82673 Score = 147 bits (162), Expect = 4e-30 Identities = 164/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || ||||| || || |||| ||||| |||||| ||||| || | ||||| ||| Sbjct 24716 AAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCT 24775 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||||||||| |||||||| ||||||| ||| |||||||| || || ||||| |||||| Sbjct 24776 TCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCT 24835 Query 192445 TGTATTTTATTTTTTACATT---AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || ||||| |||| ||||| | | ||| || || | || ||||| || || || Sbjct 24836 TGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGC---TCCACTTCAAGGGTTATA 24892 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||||| ||||| || || | ||| || |||||||| Sbjct 24893 GTTTTACCGGTTAACGTCTTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984442373482050