Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq64 259 9e-64 seq483 203 6e-47 seq3 127 4e-24 >seq64 Length=40286 Score = 259 bits (286), Expect = 9e-64 Identities = 568/848 (67%), Gaps = 26/848 (3%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| ||||||| || || ||||||||||||| ||| || || | Sbjct 17107 ATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATAA 17048 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 || ||| || |||||| ||||||| || | || | |||| | | | ||| | | Sbjct 17047 GATCCATCCAACTAAATGGGTTTTTGGCATGA-AAAACTTTTGAGCAGCCTAAACATTCT 16989 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 |||| || ||| || |||||||||| ||||||| |||||||| ||||||| ||||| Sbjct 16988 AATAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCAT-TCCAAT 16930 Query 39009 AA-TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 || | | ||||||||| || |||||| | |||||| |||||||||| ||||| Sbjct 16929 AAGATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATCTACAGCTTCTTTAAC 16870 Query 39068 tatcataattatattatttttt--gataatttatatt-taatatgattcgcatataGTAA 39124 ||| || | || || ||||| | |||||||| || ||||| | ||| | ||| Sbjct 16869 TATATTA--TGTACTACTTTTTCGGGTAATTTATTTTCTAATAAACT----ATACATTAA 16816 Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| |||||| || || || ||||| || ||| || ||||||||||||||||| | Sbjct 16815 ACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAGTGAG 16756 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 ||| ||||| | ||||| | ||| || |||| |||||| | | ||| | Sbjct 16755 TCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTCCACTAAATAG 16696 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCT 39302 ||||| || ||||| ||| || | |||||| | ||| | | || | |||| Sbjct 16695 AATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAA--AAGAGTTCGTGTCAT-- 16640 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 |||||| || ||||| |||||| ||||| | || |||||||||||| ||||| Sbjct 16639 -TAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATATTTTCAATAGCA 16581 Query 39363 TTAAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAT 39420 | |||||| || || | | Sbjct 16580 TGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAATCAACAAACTG--T 16523 Query 39421 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTG 39480 | |||| ||||| | | ||| | |||||| ||||| |||||||| | ||||||| | Sbjct 16522 AAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCAG 16463 Query 39481 AATACTGAACTTCGGAAAAGAATCGTTCAA-CTAAATTCTCAGATACAATACCATCAGAT 39539 | || ||||| || || | | ||| |||||| || | ||||| |||||| Sbjct 16462 CAATTTGTACTTCTCTCAA-AAACTTACAAGATAAATTTTCTAACACAATTCCATCACTA 16404 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| || ||||| || |||| || || |||||||| ||||| ||||||||| |||| Sbjct 16403 GCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAAGTTTCA 16344 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || || | ||| | || ||||| | |||||| ||||||||||| ||| | | | Sbjct 16343 TAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCT 16284 Query 39660 TTTTTATA 39667 |||||||| Sbjct 16283 TTTTTATA 16276 >seq483 Length=14038 Score = 203 bits (224), Expect = 6e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| ||||| |||||||| | ||||| || |||||||| Sbjct 5938 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCC 5879 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||||| || | |||| ||||||||||| |||||||| |||||||| ||||| || ||| Sbjct 5878 AATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5819 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 5818 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCC 5759 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||| |||||||| || |||| ||| |||||||| Sbjct 5758 ACTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 196 bits (216), Expect = 9e-45 Identities = 182/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||| || ||||| | || ||| ||||| ||||| || | ||||| || || ||||| Sbjct 6395 AATTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATC 6336 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||||| || | |||| ||||||||||| |||||||| |||||||| ||||| || || Sbjct 6335 AGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGG 6276 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| Sbjct 6275 TGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTC 6216 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||| || ||||||||||||| ||| || ||||| Sbjct 6215 CACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| ||||| || | ||||| || || ||||| Sbjct 6166 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 6107 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | | || || |||||||| || ||||| |||||||| ||||| || ||| Sbjct 6106 GATAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGT 6047 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| Sbjct 6046 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCT 5987 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||| || ||||||||||||| ||| || ||||| Sbjct 5986 ACTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| ||||| || | ||||| || || ||||| Sbjct 5710 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCA 5651 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | |||| ||||||||||| |||||||| |||||||| ||||| || ||| Sbjct 5650 GATAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 5591 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| || ||||| ||||| || || | || Sbjct 5590 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCAGATGCCTCA 5531 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 ||||| | ||||| || ||||| Sbjct 5530 ACTTCCAAGGTAATAGTCTTACC 5508 >seq3 Length=82673 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 || ||||| || || |||| ||||| ||||| ||||| || | | ||| || Sbjct 24716 AAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCT 24775 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 ||||||||||| |||||||| ||||||| ||| || ||||| || || ||||| |||||| Sbjct 24776 TCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCT 24835 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || ||||| |||| ||||| ||| |||| | || ||||| || || || ||| Sbjct 24836 TGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTT 24895 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || || | || || |||||||| Sbjct 24896 TTACCGGTTAACGTCTTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905102249741400