Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq483 140 3e-28 seq3 138 1e-27 seq444 98.7 9e-16 >seq483 Length=14038 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| |||| || ||||| ||||| | ||||||||| | | Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| || |||||||||||||||||||| || || |||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || ||||||||||| ||||| | || ||| |||| | || ||||| ||| Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || ||||||| || || |||| | ||||| Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6163 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| |||| || ||||| ||||| | ||||| ||| | | Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| || |||||||||||||||||||| || || |||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || |||||||| || ||||| |||| || |||| | || ||||| ||| Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || ||||||| || || |||| | ||||| Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6391 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || |||| || ||||| ||||| | ||||| ||| | | Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || |||||||||||||||||||| || || |||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || |||||||| || ||||| |||| || |||| | | ||||||||| Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || || || ||||| || ||||||| || || |||| Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATT 5926 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 ||||| |||||||| | ||||| || || | ||||| | || | || || || Sbjct 5508 GGTAAGACTATTACCTTGGAAGTTGAGGCATCTGACACTATTGAGAATGTGAAGGCCAAA 5567 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 |||||||||||||||||||| || || ||||||||| | || |||||||| || ||||| Sbjct 5568 ATCCAAGACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAA 5627 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| || |||| | || ||||| ||||| || || ||||| || ||||||| Sbjct 5628 TTGGAAGACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACTTA 5687 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 || || |||| | ||||| Sbjct 5688 GTTTTAAGATTAAGAGGAGG 5707 >seq3 Length=82673 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| |||||||||||||||| || || ||||| || | | Sbjct 24927 ATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCCAAAT 24868 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | |||| || ||||| ||| || ||||| || ||||| || ||||| ||||| Sbjct 24867 GATATTATTGAAAATGTGAAAACCAAA-ATTCAAGATAAGGAAGGCATTCCTCCTGATCA 24809 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || || || ||||| || ||||| |||| ||||| ||| | | || ||||| || Sbjct 24808 GCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATTACAA 24749 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || | ||||| || ||| |||| || ||||| Sbjct 24748 TATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGG 24701 >seq444 Length=15175 Score = 98.7 bits (108), Expect = 9e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| ||||| || || ||||| | || | ||||| ||||||||| Sbjct 5214 AATAGAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCA 5273 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 || ||||| ||||| || || || || || |||||||||||| ||| ||||||||| Sbjct 5274 GCATAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGC 5333 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 |||||| || | |||||| || || || ||||| | ||| | | || |||| Sbjct 5334 ATCTTTATATAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATG 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880824443240