Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq483 199 6e-46 seq3 141 1e-28 >seq483 Length=14038 Score = 199 bits (220), Expect = 6e-46 Identities = 183/229 (80%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | ||||||||||| |||||||| ||||| | || |||||| ||| | Sbjct 5938 TGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA- 5996 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| |||||||||| ||||| ||| |||||||| |||||||| |||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || ||||| || ||||||||||| ||| ||||| ||| | ||||| || Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || |||||||| || | || ||||| ||| ||||||||||||||| Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGTA 6165 Score = 183 bits (202), Expect = 5e-41 Identities = 188/242 (78%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | ||||||||||| |||||||| ||||| | || || ||| ||| | Sbjct 6166 TGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA- 6224 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| |||||||||| ||||| ||| |||||||| |||||||| |||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || ||||| || |||||||| || || ||||| ||| | ||||| || Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTG 146270 || ||||||||||| || | || ||||| ||| ||||||||||||| || | ||| || Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG-AATTTAATCTTT 6403 Query 146271 AA 146272 || Sbjct 6404 AA 6405 Score = 163 bits (180), Expect = 4e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | || || ||||| |||||||| ||||| | || || ||| ||| | Sbjct 5710 TGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA- 5768 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| ||||||| || ||||| ||| |||||||| |||||||| |||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || ||||| || |||||||| || || ||||| ||| |||||||| Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || |||||||| ||| | || ||||| ||| |||||||||| |||| Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGGTA 5937 Score = 129 bits (142), Expect = 9e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||| || ||||| ||| |||||||| |||||||| |||||| Sbjct 5541 GACACTATTGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5600 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || ||||| || |||||||| || || ||||| ||| | ||||| || Sbjct 5601 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 5660 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || |||||||| || | || ||||| ||| ||||||||||||||| Sbjct 5661 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGTA 5709 >seq3 Length=82673 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || ||||| || || |||| || || | || | Sbjct 24926 TGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCCAAATG 24867 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| |||| ||||||| |||| ||||| ||| ||| ||||||||||| || ||||| | Sbjct 24866 ATATTATTGAAAATGTGAAAACCAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAGC 24807 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || |||||||| || ||| |||| | | ||||| |||| Sbjct 24806 AGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATTACAATA 24747 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | || ||||| || ||||| ||||||| Sbjct 24746 TCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGG 24701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786137085820360