Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 159 3e-34 seq483 134 1e-26 >seq3 Length=82673 Score = 159 bits (176), Expect = 3e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | || | || || || || | ||| ||||||||||| || || ||||||| Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| || ||||| || | |||||| |||||| |||| |||| |||||||| || || Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || || ||||| |||||| | ||| ||| |||| | | | ||| | || | Sbjct 24820 AATGCCTTCCTTATCTTG-AATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCA 24878 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||| ||||||||||| || ||||| || || ||||| || |||||||| Sbjct 24879 CTTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCATTTT 24930 >seq483 Length=14038 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||||||||| || |||||||||||| | || | || || | |||||| ||| Sbjct 5905 GTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCCGTCTTCCAATTGTTTTCCA 5846 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || |||||||| ||||| || ||||| || ||||||||||| | ||| || Sbjct 5845 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTC 5786 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| |||| | |||||| || ||| ||||| | || || ||||| ||||||||||| Sbjct 5785 ACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAATGGTTTTTCCAGTTAAGGTC 5726 Query 29770 TTAACAAATATCTGCAT 29786 ||||| || |||||||| Sbjct 5725 TTAACGAAAATCTGCAT 5709 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | | || || || | |||||||||||||| ||||| ||||| | Sbjct 6392 TCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGA 6333 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | |||||| |||||| | || |||||||| ||||| || || Sbjct 6332 TAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 6273 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||||||||| | ||| || ||| |||| | |||||| || ||| || Sbjct 6272 AATTCCTTCTTTGTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCAC 6213 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| || ||||| |||||||| || || ||||| Sbjct 6212 TTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||||||||| || ||||| ||||| | | || | ||| || | |||||| || Sbjct 6133 GTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCTTCTAATTGTTTTCCG 6074 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || |||||||| ||||| || ||||| || ||||||||||| | ||| || Sbjct 6073 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTT 6014 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| |||| | ||| || || ||||||||| | || || ||||| || ||||| ||| Sbjct 6013 ACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATGGTTTTTCCCGTTAATGTT 5954 Query 29770 TTAACAAATATCTGCAT 29786 ||||| || || ||||| Sbjct 5953 TTAACGAAAATTTGCAT 5937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||||||||| || ||||| ||||| | | || | || || | |||||| ||| Sbjct 5677 GTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCA 5618 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || |||||||| ||||| || ||||| || ||||||||||| | ||| || Sbjct 5617 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTC 5558 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||| | || | ||||||||| || ||||| | || ||||| || || Sbjct 5557 ACATTCTCAATAGTGTCAGATGCCTCAACTTCCAAGGTAATAGTCTTACC 5508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385205195235603