Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq444 271 2e-67 seq64 170 5e-37 seq1252 127 5e-24 seq330 89.7 1e-12 >seq444 Length=15175 Score = 271 bits (300), Expect = 2e-67 Identities = 589/871 (68%), Gaps = 23/871 (3%) Strand=Plus/Minus Query 110300 TGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGAT 110359 ||| |||||||||||||||||| | ||| | ||||||| | || | ||| | | || Sbjct 6132 TGATTATTTTGGTTTCAAAACTTTAGAAAGATCTTATTTGTTACGAATTAATAACAAAAT 6073 Query 110360 CATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT 110419 | || | || ||||| |||| | | ||| | ||||||||||| ||||| | Sbjct 6072 AGTAGAGAGACCACAACATTTGTTGATGAGAGTTTCTATTGGTATTCACATTGATGATGT 6013 Query 110420 TAA---AGCTGTTATTG-AATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTA 110475 | | ||| |||| || ||| || | | |||| | || ||||||| Sbjct 6012 TGATAGAGC----ATTGGAAACATATCATTTGATGTCCCAAAAATATTTTACCCATGCTA 5957 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAG 110535 |||| || | || ||| | |||||| || |||| || ||||||||||| | | Sbjct 5956 CTCCGACTTTGTTCAACTCCGGAACTCCAAGACCACAAATGTCTTCTTGCTTTTTATTGT 5897 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATT 110594 ||| | ||||| ||||||||||||| ||| || |||||| || ||| || ||| Sbjct 5896 CCATTCAGTCCGATTCCATTGAAGGTATTTTTGAAACT-TTAAAGCAATGTGCACTGATT 5838 Query 110595 TCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC--TCAAAAGGAGCAA 110652 |||| | ||||| |||||| | || || ||| | | |||||| | Sbjct 5837 AGCAAAACAGCAGGAGGTATTGGTGTAGCAGTGCAAGATGTAAGAGGTCAAAATTCTTAC 5778 Query 110653 ATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACG 110712 || | | | | | || || ||| | ||| ||| | || ||||||||||| || || | Sbjct 5777 AT-TAG-AGGAACCAACGGAAATTCCAATGGGCTTATACCTATGTTAAGAGTGTTTAATG 5720 Query 110713 ACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATC 110769 ||||||| | |||||| ||||||| || || ||||| || || ||||| || ||| Sbjct 5719 ACACTGCTAGATATGTAGATCAAGGGGGCGGAAAAAGAAAAGGTTCTTTTGCAATTTATA 5660 Query 110770 TCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTG 110829 | ||||| |||||||||||| |||||||||| ||||| | | ||||| || ||| | Sbjct 5659 TTGAACCGTGGCATTCAGATGTATTTGAATTTTTAGATTTGAGAAAAAACCACGGAAAAG 5600 Query 110830 AAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAAC 110889 ||||| ||||||| | |||||||||||||| | |||||| | ||| | || |||||| Sbjct 5599 AAGAATTAAGAGCAAGAGATTTATTTTATGCTCTCTGGATTCCTGATCTCTTTATGAAAA 5540 Query 110890 GTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTG 110949 | || |||||||| ||| || | ||||||||| | | ||||||| | || Sbjct 5539 GAGTAAAAGAAAATAAAGAATGGACTTTAATGTGTCCTAACGAATGTCCTGGTTTGAGTG 5480 Query 110950 ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC 111009 | | ||| |||| |||||| | | ||| |||||||||| ||||||| || Sbjct 5479 AAACCTGGGGAGAAGAATTTGAAAAATTATACACAAAATATGAAGAAGAAGG---ATTAG 5423 Query 111010 GCAAACAAA---TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAA 111066 | ||| || | ||||||||||| | ||||| || | || ||| | |||| Sbjct 5422 GAAAAAGAACAGTACCAGCTCAAGATTTATGGTTTGCCATTTTACAAAGTCAAATAGAAA 5363 Query 111067 CTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATT 111126 | ||||| || ||||| || ||||||||| | ||| |||||| |||||| || | Sbjct 5362 CAGGAACCCCATATATGTTATATAAAGATGCTTGTAACTCCAAATCCAATCAACAAAACT 5303 Query 111127 TAGGAACAATTAAGTCTAGTAATTTGTGCTG 111157 | ||||| ||||| | ||| ||||| ||||| Sbjct 5302 TGGGAACTATTAAATGTAGCAATTTATGCTG 5272 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 112588 TTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAAAAAGCAA 112647 |||||||| | || || ||||||| || || | || |||||| || || |||| | Sbjct 5143 TTATTACAAGAAATTTAGATAAAATAATAGAAAGAAATTATTATCCAGTTAAAGAAGCCA 5084 Query 112648 AACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGATGTAT 112707 || ||| ||| | |||||||||||||| ||||| || |||||||| ||||| | Sbjct 5083 AAGTTTCAAATCATCGACATAGACCAATTGGAATTGGTGTTCAAGGATTGGCTGACACCT 5024 Query 112708 TTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAGATTT 112767 | ||| | || || ||| | ||| || ||| ||| ||| || || ||| |||| Sbjct 5023 TCATGTTATTGAGATATCCATATGAATCGGACGATGCCAAAGAATTGAACAAAAGAATTT 4964 Query 112768 TCGAAACAATCTATTTCGCTGCTATGACTGAATC 112801 | ||||| || ||||| || ||| || ||||| Sbjct 4963 TTGAAACTATGTATTTTGCAGCTTTGGAAGAATC 4930 >seq64 Length=40286 Score = 170 bits (188), Expect = 5e-37 Identities = 555/851 (65%), Gaps = 21/851 (2%) Strand=Plus/Plus Query 131437 TCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGGAC 131496 ||| ||| | ||| || |||| ||| | ||||| ||| | | || | || ||||| Sbjct 16245 TCCGATTTTATATCCGGAAGTTTGGGATTTTTATAAAAAAGCAGAAGCTTCTTTTTGGAC 16304 Query 131497 TGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAATGA 131556 || |||||| || ||| || | | ||| | | |||| |||| |||| ||||| Sbjct 16305 TGCTGAAGAAATTGATTTGTCTAGTGATTTAAAAGATTATGAAACTTTAAAAGACAATGA 16364 Query 131557 AAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGA 131616 ||| |||| | | | || | ||||| || || | |||||||| ||||| | || Sbjct 16365 GAAACATTTCATAAACCATGTGTTGGCATTTTTTGCAGCTAGTGATGGAATTGTGTTAGA 16424 Query 131617 AAATCT-TGTTATTAATTTCATTCA-AGAAATTGATATTCCTGAAGTAACATCGTTCTAC 131674 |||| | | || | | ||| || | |||| | | ||| |||||| || | ||| || Sbjct 16425 AAATTTATCTTGTAAGTTT--TTGAGAGAAGTACAAATTGCTGAAGCAAAAAAGTTTTAT 16482 Query 131675 ACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGT 131734 | ||||| ||||| ||| ||| ||| || | || || |||||||| | | Sbjct 16483 TCTTTTCAGATAGCTGTAGAAAATATCCATTCAGAAACTTACAGTTTGTTGATTGATAAT 16542 Query 131735 CTTGTTAAAAATGAAGATGATAAAAATAAATT-ATTTGATGCTGTAAATAAATTTCCTGC 131793 | ||||| |||||| ||| || | |||||| |||| ||||| | | || | ||||| Sbjct 16543 TATATTAAAGATGAAGCTGA-AAGATTAAATTTATTTCATGCTATTGAAAATATACCTGC 16601 Query 131794 AATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAA---TTT 131850 | ||||| |||||| |||||| |||||||||| | || | | || ||| Sbjct 16602 TGTAAAAAACAAAGCATTATGGGCAGCTAAATGGATTAATGA------CACGAACTCTTT 16655 Query 131851 TTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTG 131910 | || |||| |||| || |||||||||||||||||| | ||| || ||| || Sbjct 16656 TGCTGAAAGAATTGTTGCCAATGCTTGTGTTGAAGGTATTCTATTTAGTGGAAGTTTTTG 16715 Query 131911 TGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATT 131970 ||| ||||| ||| | || || | |||| ||||||| | || ||| |||| Sbjct 16716 TGCAATCTTCTGGTTCAAAAAACAAAACAAAATGCATGGACTCACTTTTAGTAATGAATT 16775 Query 131971 CATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGC 132030 ||| |||||||||| |||||| || || ||| | ||||| ||||| ||| | Sbjct 16776 GATCAGTAGAGATGAAGGATTGCACACAGATTTTAATTGTTTAATGTATAGTTTATTAGA 16835 Query 132031 TGATAAACTTGATGAAAATAATATTAAACAACTTA-TAAGCGAAGCAGTTGATATCGAGA 132089 ||||| | ||||| | || || | || || | | ||||| || ||| | ||| Sbjct 16836 AAATAAATTACCCGAAAA-AGTAGTACATAATATAGTTAAAGAAGCTGTAGATGT--AGA 16892 Query 132090 AGGA--GTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTAT 132147 | || ||||| ||| | || || || || | ||||| |||||| | | || Sbjct 16893 AAGATCATTTATCTGCGAATCATTACCATGTGATCTTATTGGAATGAATTCCAGATTAAT 16952 Query 132148 GAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGAT 132207 | | || |||||||| ||||||||||| || | | | || | || || | Sbjct 16953 GTCACAATATATTGAATTTGTTGCTGATCGACTATTAGAATGTTTAGGCTGCTCAAAAGT 17012 Query 132208 TTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAA 132267 || | | || ||||||| | || |||||||| ||||| | |||| ||||| || Sbjct 17013 TTTTCATGCCAAAAACCCATTTAGTTGGATGGATCTTATTTCTTTACAAGGAAAAACAAA 17072 Query 132268 CTTCTTCGAAA 132278 ||||| |||| Sbjct 17073 TTTCTTTGAAA 17083 >seq1252 Length=4530 Score = 127 bits (140), Expect = 5e-24 Identities = 126/162 (78%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | |||||| | ||||| || | |||| ||||||||| ||| ||||||||| | | Sbjct 1457 GTTTTATTCAATCGACAACCTTCTTTACATAGAATGTCTATTATGTCTCATAAAGCAAGA 1398 Query 305390 GTATTATCTGGATTGA---CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCG 305446 ||| | |||| | ||||||| || |||| | |||| ||||| ||||||||||| Sbjct 1397 GTAATG---GGATATAAAACATTTCGTTTTAATGAATGTGCCTGTACCCCTTATAATGCT 1341 Query 305447 GATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||||||||||||||| | ||| | |||||| || Sbjct 1340 GATTTTGATGGAGATGAAATGAATGTTCATATTCCTCAAACA 1299 >seq330 Length=19929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||| ||| || |||||| || | || || || || || ||| | ||||||||| Sbjct 18188 AGGCATATGAGAGATGATGATTATATTTTATTTAACAGACAGCCTTCATTACATAAAATG 18129 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| || |||| ||| ||||| | | || |||||||||||| || Sbjct 18128 AGTATTATGGGACACAAAGCAAAAATATTACCATATTCTACTTTTCGATTAAATTTATCG 18069 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | | ||||||||||| |||||||| ||||| |||||||| | ||| || | ||| Sbjct 18068 GTTACTTCTCCTTATAATGCCGATTTTGACGGAGACGAAATGAACTTACATTTAGCCCAA 18009 Query 305486 TC 305487 || Sbjct 18008 TC 18007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186767440385663