Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq483 120 2e-22 seq3 114 8e-21 >seq483 Length=14038 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | ||| || || |||| |||| ||||| || ||||| ||||| | Sbjct 5936 ACCACCTCTTAATCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAA 5877 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| |||||||||||||| ||||| || || | || |||||| | || Sbjct 5876 TAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 5817 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| ||| |||| || | ||||| |||||||| Sbjct 5816 AATTCCTTCTTTGTCTTGGATTTTGGCCTTC-ACATTTTCAATAGTGTCTGATGATTCCA 5758 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || ||||| || || || || ||||||||| Sbjct 5757 CTTCCAAGGTAATGGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCATA 5708 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | ||| || || |||| ||| |||||||| ||||||||||| || Sbjct 6391 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGAT 6332 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | |||| |||||||||||||| ||||| || || | || |||||| | || Sbjct 6331 AAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 6272 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| | | |||| || | ||||| ||||||||| Sbjct 6271 ATTCCTTCTTTGTCTTGGATTTT-GGCCTTTACATTTTCAATAGTGTCTGATGATTCCAC 6213 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || ||||| ||||| || || || |||||| Sbjct 6212 TTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCATA 6164 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || || |||| ||| ||||| || ||||||||||| || Sbjct 6164 ACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGA 6105 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || ||||||||||||||||| || || | || |||||| | || Sbjct 6104 TAAAGTTCTTCCATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGG 6045 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | | |||| || | || || |||||| | Sbjct 6044 AATTCCTTCTTTGTCTTGGATTTT-GGCCTTTACATTTTCAATAGTATCTGATGATTCTA 5986 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || ||||| ||||| || || || |||||| Sbjct 5985 CTTCCAATGTAATGGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCATA 5936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || || |||| ||| ||||| || ||||||||||| || Sbjct 5708 ACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGA 5649 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| |||||||||||||| ||||| || || | || |||||| | || Sbjct 5648 TAAAGTTCTTCCGTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 5589 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 5588 AATTCCTTCTTTGTC 5574 >seq3 Length=82673 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || |||||||| || || || || || |||||||||||||| ||||| Sbjct 24737 TCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAAT 24796 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || ||||||||||| | || | ||||| || || |||||| |||| |||| Sbjct 24797 ATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTT-GGTTTTCACATT 24855 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | || ||| ||||| |||| || || |||||||| |||||||| || || Sbjct 24856 TTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCAC 24915 Query 33738 AAAGATCTGCAT 33749 |||||| ||||| Sbjct 24916 AAAGATTTGCAT 24927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692049863360