Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq444 141 8e-29 seq483 134 1e-26 seq3 111 1e-19 >seq444 Length=15175 Score = 141 bits (156), Expect = 8e-29 Identities = 613/947 (65%), Gaps = 32/947 (3%) Strand=Plus/Plus Query 136782 CTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTTTTT-GCTTAATTT 136840 |||||| || | | ||| | ||||| ||||| | ||||| || ||||| | || |||| Sbjct 4443 CTGATCAATAAATGCTCCTCTATCTGCAGCCATAT-CAATAATATTTTTTTGTTTTATTT 4501 Query 136841 CCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGGAATTTCATCGATATTCTGTACAG 136900 |||| | ||||| | | ||||| | || || |||||| ||||| ||| ||| Sbjct 4502 CCCAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACAC 4561 Query 136901 ATCCGTTGTT-----TTTGATGATTTTCATCATGAGATCAGTCGAGTATACGTTGCTCTC 136955 ||| |||| | | || | || |||| ||| | | || || | || || Sbjct 4562 TTCCATTGTGAGCAATCAGTTGTTGTT--TCATATCTTCATCCCA-TAGACCT--CTATC 4616 Query 136956 TA-TGAGTTTATCGACGAGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGC 137014 | | | | | || || ||||| |||||||||| |||| || || ||||| | Sbjct 4617 AAATAAATCTTTCAAC-AGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTC 4675 Query 137015 -GTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCA 137073 ||| || | || |||||| | || || || ||||| || || || ||||| |||| Sbjct 4676 TGTAA-TAAATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGAT 4734 Query 137074 GTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAAT 137133 || | || || ||||| ||| | || || ||||| | |||||| ||| | | | Sbjct 4735 GTAGAAGCCGTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATT 4794 Query 137134 TGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCA 137193 | ||| || | || | ||||||||| || || | ||| |||||||| ||| Sbjct 4795 TTTTGTTTTAATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCA 4854 Query 137194 AACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGT 137253 |||||||||| || ||||| || ||| || | | | ||||| ||||| || | Sbjct 4855 AACTGCAAAATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACC 4914 Query 137254 TTCGCCAGTTCAA--TACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTC 137311 || |||| ||| | | ||| | | || || | || |||||||| | ||| || Sbjct 4915 TTAGCCAATTCTACGGATTCT--TCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTT 4972 Query 137312 TATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC-CAATATAGCGAAAGCATCT 137370 | ||||||||| | || || | || || || ||||| ||||| ||| | || Sbjct 4973 TGTTCAATTCTTTGGCATCGTCCGATTCATATGG-ATATCTCAATAACATGAAGGTGTCA 5031 Query 137371 GCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTA 137430 || | |||||||| ||| || || || ||||| ||| | |||||| | || || Sbjct 5032 GCCAATCCTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCT 5091 Query 137431 ACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGAC 137490 || |||||| | ||| ||||| ||| ||| | ||| | |||| | ||||| Sbjct 5092 TTAACTGGATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTA 5151 Query 137491 ACTTTGTAGAGCAATTCGAAATCGAA--GCTTTTAGACTGTTTGTTAGCAAAATTATTGA 137548 | | || || || |||||| || | ||| | | | | |||| ||| | Sbjct 5152 ATATCATAAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCT--ACAAATTTACATA 5209 Query 137549 CGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTATTGTCGCTG--TATTGTACAAT 137606 ||||||||| ||||| ||||| ||||| ||| || | || |||| |||||| Sbjct 5210 AGGCAATAGAAGCTAAATTGCAAACGGCTACTTC--CCCTGGAGATGTATATTCTACAAT 5267 Query 137607 TTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTT 137666 |||| ||| | |||||| | || |||||| || | ||||||| ||| ||| Sbjct 5268 TTCGCAGCATAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTT 5327 Query 137667 GACGTG-ATCTTTATATATCATATACGGAGTTCCGGTTTCGACTTGA 137712 || | ||||||||||| |||||| || ||||| ||||| | |||| Sbjct 5328 -ACAAGCATCTTTATATAACATATATGGGGTTCCTGTTTCTATTTGA 5373 >seq483 Length=14038 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| |||||| | || || | ||||| ||| | Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | ||||| ||||| || ||||| || || || || ||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | ||| |||||| | ||||||| |||| | | |||||||| Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||||||| | || ||||| |||||||| |||||||| Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6163 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| |||||| | || || | ||||| ||| | Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | ||||| ||||| || ||||| || || || || ||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || |||||| | ||||| | |||| | | |||||||| Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||||||||||| | || ||||| |||||||| |||||||||| Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGAA 6393 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| ||| | || || ||||| || ||||| || || || || ||||| Sbjct 5541 GACACTATTGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5600 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || |||||| | ||||| | |||| | | |||||||| Sbjct 5601 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 5660 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||||||| | || ||||| |||||||| |||||||| Sbjct 5661 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 5707 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || ||||| |||||| | || || | ||||| ||| | Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||| || ||||| || || || || ||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || |||||| | ||||| | |||| | | ||||| || Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||||||||| | || ||||| |||||||| ||||| || Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGG 5935 >seq3 Length=82673 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 ||||| |||| || |||||| | ||||| || || |||||||| ||| | || || | Sbjct 24943 TTTTCTGTTAACAAAAATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCT 24884 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 ||||| || | || |||| ||| || | || ||| |||||| ||||| || || Sbjct 24883 TGAAGTGGAGCCAAATGATATTATTGAAAATGTGAAAACCAAAATTCAAGATAAGGAAGG 24824 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 25338 || || || |||||||| || | || | | || |||||| | |||||| ||| Sbjct 24823 CATTCCTCCTGATCAGCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAAC 24764 Query 25339 TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGG 25398 | ||||||||||| ||||||||||| || | || ||||| || ||||| |||| Sbjct 24763 CCTTTCGGATTACAATATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGG 24704 Query 25399 AGGA 25402 |||| Sbjct 24703 AGGA 24700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445077803542560