Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq67 217 1e-51 seq373 178 1e-39 >seq67 Length=41086 Score = 217 bits (240), Expect = 1e-51 Identities = 454/669 (68%), Gaps = 12/669 (2%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 |||||||| |||| ||||| ||| |||||| | |||||| ||||||| |||| ||| Sbjct 28359 TTTCCGTTATTAACGACAAAGAAATTGTTTTTAAGAGGCATCATAGAAGAATTGTTGTGG 28418 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||| | ||| || |||| || | || | ||| | | |||| || ||| | Sbjct 28419 TTTATAAGAGGAGAAACAAATGGAAATATTTTGTTAGATAAAAATGTGCGAATATGGGAA 28478 Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGA---TTACAAGATAGGGA--TGAAG 40866 || | | | || |||| | | || | || ||| || ||||| |||| Sbjct 28479 GCTAATGGAAC--AAGGGAATTTTTAGA-CAAACGAAATTTATTTGACAGGGAAGTGAA- 28534 Query 40867 GTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTA 40926 |||| | || || | ||||||||||||| | |||||||||| ||| ||||| | | Sbjct 28535 -TGATTTAGGACCCATATATGGATTTCAGTGGAGACATTTTGGTGCAGAATATACGAACA 28593 Query 40927 TGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTA 40986 || | ||||||||| |||||||| | ||||||||| | || || ||| |||| Sbjct 28594 TGCATGATGATTATACAAATAAAGGTGTTGATCAATTAAAAAATGTAATTGATTTAATTA 28653 Query 40987 AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATT 41046 || ||||| | | || | || ||||| || || ||||| || | || || | Sbjct 28654 AAAATGATCCTAAGAATAGAAGAATTATATTATGTGCATGGAATCCTAAAGATTTAGAAA 28713 Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| || || |||||| | |||||||||||||| ||| | | || ||| Sbjct 28714 AAATGGCATTACCTCCCTGTCATGTATTATGTCAGTTTTATATTTTTGAAAATAAATTGT 28773 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | ||| | ||||||||||||| |||| |||| |||| || || |||||||| || Sbjct 28774 CCTGTATAATGTATCAAAGATCTTGTGATTTGGGCTTAGGAGTACCTTTTAACATTGCTT 28833 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTG 41226 ||| || | | || | ||||| || || ||| ||||||| || ||||||| Sbjct 28834 CCTATTCTATTTTTACTCACATGATAGCCCAAGTTTGTAATTTAATTCCATATGAATTTA 28893 Query 41227 TTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAAC 41286 | || | |||||| ||| ||||||||| || ||||| | || | ||||| | ||||| Sbjct 28894 TCCATATATTAGGAAATGCACATATTTATATGAATCATGTTGATCAGTTAAAAAAACAAA 28953 Query 41287 TGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCG-CTGTTGAAAACATT 41345 | | |||| || || |||||||| || | |||||| || ||| |||||||| Sbjct 28954 TTAATCGAATTCCCTATCCTTTTCCAACTCT-CAAATTAAATCCGAATGTGCAAAACATT 29012 Query 41346 GATGAtttt 41354 || |||||| Sbjct 29013 GAAGATTTT 29021 >seq373 Length=17423 Score = 178 bits (196), Expect = 1e-39 Identities = 380/560 (68%), Gaps = 22/560 (4%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTG 19376 ||||||||||| || | |||| ||||| ||| | | | ||||| || || || Sbjct 15153 ATTAAACAATTAGG-TATAAAGCATGTAAAGGGAATGATTTTATATGGACCTCCAGGAAC 15095 Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAA 19433 ||||||||| | ||||| ||| || | | ||| ||| | | | | |||| || Sbjct 15094 GGGAAAAACACTTATTGCAAGACAAATCGGGAAAACGTTAAATGCTAGAGAACCG---AA 15038 Query 19434 AATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACG 19493 |||| | ||||| |||||||| ||||||||||||||||| || || ||||||||| | || Sbjct 15037 AATTATTAATGGACCTGAAATATTAAATAAATATGTAGGACAGTCTGAAGAAAATATTCG 14978 Query 19494 ACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA-AAAGTTCTTTG- 19551 | | | ||| || || ||| ||| | |||| || | | | ||| |||||| Sbjct 14977 AAATCTTTTTAAAGATGCGGAAATGGAATATAAAC----AGAGTGGAGAAAATTCTTTAT 14922 Query 19552 --CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---TTCTGGTG 19606 || ||||| ||| |||||||| | || || || |||| ||| |||| ||| || | Sbjct 14921 TACATATTATTATATTAGATGAAATTGATGCCATTTGTAGACAACGAGGGAGTTCAGGAG 14862 Query 19607 TA---AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 | |||||| |||| | | |||| ||||| || |||| ||| |||| || ||| Sbjct 14861 CTTCCACAGGAGTAAATGATAGTATTGTAAATCAGCTATTGTCGAAAATAGATGGAATTA 14802 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 | | ||||||||||| | ||||| ||||| |||||| | || |||| || || Sbjct 14801 ATAGTTTAAATAATATTTTGTTAATTGGAATGACAAATAGAATTGATCTAATTGATGACG 14742 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTG 19783 | ||| | ||||| ||||| || ||| || | | ||||| ||||| ||| || | Sbjct 14741 CTTTACTTCGACCAGGTCGATTTGAATTACATGTGGAAATATCTTTACCGGATAAAAACG 14682 Query 19784 GACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATG 19843 | | | | |||||||| ||||||||| || ||| || | ||| | |||| | Sbjct 14681 GGAGAATTCAGATTTTAAATATACATACAAAAAATATGAGAAATAATGATAAATTAAGTC 14622 Query 19844 ACGATGTAGATCTAGAAGAA 19863 ||||||| || || |||| Sbjct 14621 CCGATGTAAATTTAACAGAA 14602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441550362915