Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq444 152 4e-32 seq3 102 7e-17 >seq444 Length=15175 Score = 152 bits (168), Expect = 4e-32 Identities = 839/1322 (63%), Gaps = 39/1322 (3%) Strand=Plus/Plus Query 130793 TAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTT 130852 ||||||||||| ||| | |||||||| ||||| || || || || ||||||| ||||| Sbjct 4681 TAAATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAA 4740 Query 130853 GCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGC 130912 || || ||||| || | ||||| |||||| | | ||| || | | |||||| | Sbjct 4741 GCCGTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGT 4800 Query 130913 TTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAAT 130969 || ||||||||||| | ||| | | || | || || |||||||| ||||| Sbjct 4801 TTTAATTCATCCCAGTTCCA---ATATTTATTATCTACTTTTACATTCCACATGTCAAAC 4857 Query 130970 TGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGA 131029 || | || ||||| || || || || || || | ||| ||| |||| | || | Sbjct 4858 TGCAAAATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTA 4917 Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||| || | ||||||||||| | |||| || ||||| |||| ||| || Sbjct 4918 GCCAATTCTACGGATTCTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTC 4977 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 |||| ||| || | || || || ||| || ||| ||| || || | ||| || | Sbjct 4978 AATTCTTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAAT 5037 Query 131150 CCCTGTATCCCAACGCCCACCGGTCTATGT--TTTAAATTACATTTACGCGAACATTCGG 131207 || || | |||| || | ||||||||| | | | | | || || | || Sbjct 5038 CCTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGC-TTCTTTAAC 5096 Query 131208 TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGC 131267 | |||||| || | || |||||||| | |||||| | | |||| || | Sbjct 5097 T-GGATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATAT 5155 Query 131268 TTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATA 131327 | | ||| | ||||||||| | |||| | | |||||||| | || | Sbjct 5156 CATAAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAA 5215 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGC 131387 | || || | ||| ||||| || ||| | | ||| | ||||||||| || Sbjct 5216 TAGAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGC 5275 Query 131388 ACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-G 131446 | ||||| || | || || || ||||| |||||||||||| ||| | | | ||| | Sbjct 5276 ATAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTT-GGAGTTACAAGCA 5334 Query 131447 TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA-- 131504 || || || | ||| || || || || ||||| | |||| ||| | |||| | || Sbjct 5335 TCTTTATATAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATG--GCAAACC 5392 Query 131505 AGAGTTTTCGAGCAG--ACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTA 131562 | | | | |||| | || || | || || | || || ||| || ||| ||| Sbjct 5393 ATAAATCTTGAGCTGGTACTGTTCTTTTTCCTAAT--CCTTCTTCTTCATATTTTGTGTA 5450 Query 131563 CAACGTTTCAAAGTTTTGGCCAAACG---AACTGTCCAAATTGGGACATTCGCTGGGACA 131619 || ||||||| | || || | | ||| |||| ||||||||| | ||||| Sbjct 5451 TAATTTTTCAAATTCTTCTCCCCAGGTTTCACT---CAAACCAGGACATTCGTTAGGACA 5507 Query 131620 CATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAA 131679 ||||| | ||| | || | || |||| |||||||| | ||| || | ||| | Sbjct 5508 CATTAAAGTCCATTCTTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAG 5567 Query 131680 CGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAA 131739 || || || | |||||| ||| || |||||| | || ||||| |||||| ||| Sbjct 5568 AGCATAAAATAAATCTCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAA 5627 Query 131740 AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT 131799 ||| || || | || | |||||| ||||| | ||| | ||| | | ||||| | || Sbjct 5628 AAATTCAAATACATCTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTT 5687 Query 131800 ACCG---CCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAA 131856 ||| ||||||| |||| | | | ||| || | || | ||||| || | Sbjct 5688 TCCGCCCCCTTGATCTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAG 5747 Query 131857 ACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGG--CTCTGATTTTGTGA 131914 || |||| ||||| ||||| | ||||||| | || | |||| | | || Sbjct 5748 CCCATTGGAATTTCCGTTGGTTCCTCTAATGTA--AGAATTTTGACCTCTTACATCTTGC 5805 Query 131915 ACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTT 131973 || | ||||||||||| || || ||| || ||||| |||| ||| ||| | Sbjct 5806 ACTGCTACACCAATACCTCCTGCTGT-TTTGCTAATCAGTGCACATTGCTTTAAAGTTTC 5864 Query 131974 ATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGT-- 132031 | | |||||||| | | || | |||| | |||||||||||| |||| ||| Sbjct 5865 AAAAATACCTTCAATGGAATCGGACTGAATGGACAATAAAAAGCAAGAAGACATTTGTGG 5924 Query 132032 TGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCC 132091 | || | || |||| ||||| || || | || || |||||| ||||| || | Sbjct 5925 TCTTGGA--GTTCCGGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGAC 5982 Query 132092 AT 132093 || Sbjct 5983 AT 5984 >seq3 Length=82673 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || || | ||| || || || |||||||| |||||||| |||||||| || Sbjct 24701 CCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGAA 24760 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||| | ||||| || || | || | ||||| ||||| || || Sbjct 24761 AGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGA 24820 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTC-TGTGGCTTCAAC 27199 | || || ||||| || ||| |||||| |||| | | | || | ||||| || | Sbjct 24821 ATGCCTTCCTTATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCA-C 24879 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||| ||| || || | || ||||||||||||||||| Sbjct 24880 TTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCAT 24927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424918951377096