Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq444 149 8e-31 >seq444 Length=15175 Score = 149 bits (164), Expect = 8e-31 Identities = 846/1333 (63%), Gaps = 28/1333 (2%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| | |||||||||||||| |||||||||| || || ||||||| || || Sbjct 4681 TAAATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAA 4740 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || || | || | | || | | ||| | | | || || Sbjct 4741 GCCGTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGT 4800 Query 110828 TTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAACTG 110883 || | ||||||||| || || | | ||| || |||| ||||||||||||| Sbjct 4801 TTTAATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCC-ACATGTCAAACTG 4859 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | |||| | || || || | ||| |||||||||| || || | | ||| Sbjct 4860 CAAAATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGC 4919 Query 110944 CAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||||| || | | | |||| | ||| |||||| |||||||| || | |||| Sbjct 4920 CAATTCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCA 4978 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || ||||| || || || ||| ||| || | | || || || || || | | Sbjct 4979 ATTCTTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATC 5038 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTCTC-AA 111119 |||||||||| | ||||| ||||| ||||| ||| || |||| || ||| || Sbjct 5039 CTTGAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCT---TCTTTAA 5095 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | |||||| ||||||| || || | | | || |||| | |||| ||| | || || | Sbjct 5096 CTGGATAATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATAT 5155 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 ||| |||||||| ||||||| | | || || ||| | || | ||| | Sbjct 5156 CATAAAGTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAA 5215 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || || ||||||||||| || || | | ||| || |||| |||||| | Sbjct 5216 TAGAAGCTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGC 5275 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 |||| ||| || ||||| || ||||| || | ||| || || ||| || |||| Sbjct 5276 ATAAATTGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCAT 5335 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA-TTTG-AGAATAGCCTTCCA 111417 | || || | ||| || || || || || || | | ||| |||| | ||| || ||| Sbjct 5336 CTTTATATAACATATATGGGGTTCCTGTTTC--TATTTGACTTTGTAAAATGGCAAACCA 5393 Query 111418 AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 111477 | ||| |||||||| | || | ||| || | || || |||||||| | Sbjct 5394 TAAATCTTGAGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAA 5453 Query 111478 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537 |||||| || || ||| | || | ||| || | || ||||| | | Sbjct 5454 TTTTTCAAATTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAA 5513 Query 111538 AGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 111597 || ||||| | ||| | || | ||||| || || || |||||||| || | | Sbjct 5514 AGTCCATTCTTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATA 5573 Query 111598 AAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTC 111657 ||| | |||||| | ||||| | || ||||| || || || | || || Sbjct 5574 AAATAAATCTCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTC 5633 Query 111658 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCC 111713 | | ||| | ||||| || |||| ||| | ||| | ||| || |||| |||| Sbjct 5634 AAATACATCTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCC 5693 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 | |||||| |||||| | || ||| | ||||| || | | ||| || |||| |||| Sbjct 5694 C-CCTTGATCTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCAT 5752 Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC- 111832 || | || || || || | ||| ||| || | |||| ||||| || | ||| Sbjct 5753 TGGAATTTCCGTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTACATCTTGCA-CTGCT 5811 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | |||||||| || || || || | ||||| | | | | |||| || | ||| Sbjct 5812 ACACCAATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAATA 5871 Query 111893 CCGTTGATTGAGTCCTCCTTGTTGG-CGATAAGGAAGCAACTGGACATCTGCGGTCTTGG 111951 || | || || || || ||| | |||| |||||| ||||| || |||||||| Sbjct 5872 CCTTCAATGGAATCGGACTGAATGGACAATAA-AAAGCAAGAAGACATTTGTGGTCTTGG 5930 Query 111952 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGGGACATCTTGT 112010 || || | ||||| | || || || || || | || ||| |||||||||| | Sbjct 5931 AGTTCCGGAGTTGAACAAAGTCGGAGTAGCATGGGT-AAAATATTTTTGGGACATCAAAT 5989 Query 112011 CGTATGTCTCCAA 112023 ||||| ||||| Sbjct 5990 GATATGTTTCCAA 6002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008582256800