Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq67 109 4e-19 >seq67 Length=41086 Score = 109 bits (120), Expect = 4e-19 Identities = 341/521 (65%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 111600 ATAATTCTCCAATTCAAAGTCATCAGCAACAAAATCGTCAATGCAAGCAACTCTTCG--T 111657 ||||||||| | || || || || || |||||| |||||| || |||| | Sbjct 29051 ATAATTCTCTATTTTAATATCGTCTACAGTAAAATCTTCAATGTTTTGCACA-TTCGGAT 28993 Query 111658 TTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGT 111717 ||||||| || ||||||| || || |||| ||| ||| || ||| | | Sbjct 28992 TTAATTTG-AGAGTTGGAAAAGGATAGGGAATTCGATTAATTTGTTTTTTTAACTGATCA 28934 Query 111718 ATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAA 111777 | ||||| | ||||| ||| |||| ||||| |||||| ||||| | || ||| Sbjct 28933 ACATGATTCATATAAATATGTGCATTTCCTAATATATGGATAAATTCATATGGAATTAAA 28874 Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 | | || || ||||||| || | | | || |||||||||||| || || Sbjct 28873 TTACAAACTTGGGCTATCATGTGAGTAAAAATAGAATAGGAAGCAATGTTAAAAGGTACT 28814 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 |||| ||||| ||| | ||||||||||| | ||| || | |||||||| | | | Sbjct 28813 CCTAAGCCCAAATCACAAGATCTTTGATACATTATACAGGACAATTTATTTTCAAAAATA 28754 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAA-----GGGTC 111952 ||||| ||||| | ||||||||| ||||| |||||||| || |||| || Sbjct 28753 TAAAACTGACATAATACATGACAGGGAGGTAATGCCAT--TTTTTCTAAATCTTTAGGAT 28696 Query 111953 CCCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACAT 112012 ||||||||| | || || ||||| | | ||| || || ||| | || |||| Sbjct 28695 TCCATGCACATAATATAATTCTTCTATTCTTAGGATCATTTTTAATTAAATCAATTACAT 28636 Query 112013 TCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACAT-CCAGTGTATGTTGCC 112071 | | || || | |||||| |||||||| | || ||| || ||| ||| Sbjct 28635 TTTTTAATTGATCAACACCTTTATTTGTATAATCATCATG-CATGTTCGTATATTCTGCA 28577 Query 112072 CCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 ||| | |||||||| || |||||||| || || || | ||| Sbjct 28576 CCAAAATGTCTCCACTGAAATCCATATATGGGTCCTAAATC 28536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391931350695229