Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq483 102 6e-17 >seq483 Length=14038 Score = 102 bits (112), Expect = 6e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| || ||||| | || || ||| |||||| | || || ||| | || Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || || ||||| ||||||||||| |||| || | Sbjct 6225 GACACTATTGAAAAT--GTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATC 6282 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||| ||||| |||||||||||||| |||| | | | || || ||||||| Sbjct 6283 AACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACA 6342 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||||||||| ||| || || || ||||| Sbjct 6343 ACATCCAAAAAGAATCCACCTTACACTTAGTTTT 6376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| || ||||| | || || ||| |||||| | || || ||| | || Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || || ||||| ||||||||||| |||| || | Sbjct 5997 GATACTATTGAAAAT--GTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATC 6054 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||| ||||||||||||||||| || || | | | | || || ||||||| Sbjct 6055 AACAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACA 6114 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||| ||||| ||| || || || ||||| Sbjct 6115 ACATCCAGAAAGAATCCACCTTACACTTAGTTTT 6148 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || || ||| | ||||| ||||| |||||||||||||| Sbjct 5574 GACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAA 5633 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| | | | || || |||||||||||||| ||||| ||| || || || ||||| Sbjct 5634 GACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACTTAGTTTT 5692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || || ||| | ||||| ||||| |||||||||||||| Sbjct 5802 GACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAA 5861 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| | | | || | ||||| |||||||| ||||| |||||| || || ||||| Sbjct 5862 GACGGAAGAACTTTATTGGATTATAACATCCAGAAAGAATCCACTTTACACTTAGTTTT 5920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849462511241