Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq483 123 6e-23 seq3 95.1 3e-14 >seq483 Length=14038 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | |||||| ||||| ||||||||||||||| | || ||||| Sbjct 5924 TCTTAAAACTAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCC 5865 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| || || || || ||||| | | |||||| || || |||| |||||| || Sbjct 5864 GTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTT 5805 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || ||||| ||||| || ||||| || ||| || || | || || Sbjct 5804 GTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAAT 5745 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || | ||||| || || | |||||| Sbjct 5744 GGTTTTTCCAGTTAAGGTCTTAACGAAAATCTGCAT 5709 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | ||||| |||||||||||||| ||||| | | || ||||| Sbjct 6380 TCTTAAAACTAAGTGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTTCC 6321 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| || || || || ||||| | | |||||| || || |||| |||||| || Sbjct 6320 GTCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTT 6261 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || || ||||| || ||||| || ||| || || | || || Sbjct 6260 GTCTTGGATTTTGGCCTTTACATTTTCAATAGTGTCTGATGATTCCACTTCCAATGTAAT 6201 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| | || || || || | ||||| Sbjct 6200 GGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 6165 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | ||||| ||||| |||||||| ||||| | | || ||||| Sbjct 6152 TCTTAAAACTAAGTGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCC 6093 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || ||||| | | |||||| || || |||| |||||| || Sbjct 6092 ATCTTCTAATTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTT 6033 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || || ||||| || || || || ||| || || | || || Sbjct 6032 GTCTTGGATTTTGGCCTTTACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAAT 5973 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| | || || || || | ||||| Sbjct 5972 GGTTTTTCCCGTTAATGTTTTAACGAAAATTTGCAT 5937 >seq3 Length=82673 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||||||||| || ||||||| |||||| | |||||||| || || || Sbjct 24731 GTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCTTCCAATTGTTTTCCA 24790 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | || || || |||||||||| |||||||| || || || || |||| Sbjct 24791 GCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTGGTTTTC 24850 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || | ||| || || || || || || || || || || | ||| Sbjct 24851 ACATTTTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTTAACGTC 24910 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||||| Sbjct 24911 TTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159107697572795