Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq483 152 1e-31 seq778 84.2 5e-11 seq3 84.2 5e-11 >seq483 Length=14038 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||| | |||||||| || ||||| | || || ||| Sbjct 6361 GTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCA 6302 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || |||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 6301 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTT 6242 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || |||||||| | |||||| || || || || || || ||||| || ||| Sbjct 6241 ACATTTTCAATAGTGTCTGATGATTCCACTTCCAATGTAATGGTTTTTCCCGTTAATGTT 6182 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 6181 TTAACGAAAATTTGCAT 6165 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||| |||| |||||||| | |||||||| |||||||||| || || || Sbjct 6133 GTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCTTCTAATTGTTTTCCG 6074 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || |||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 6073 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTT 6014 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || || ||||| | ||| || || || || || || || ||||| || ||| Sbjct 6013 ACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATGGTTTTTCCCGTTAATGTT 5954 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 5953 TTAACGAAAATTTGCAT 5937 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | |||||||||||| |||| || ||||| |||||||| || ||||| | || Sbjct 5912 GTGTAAAGTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCCGTCTTCCAATTG 5853 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| ||||| | || |||||| || || ||||| ||||| ||||||||||| || Sbjct 5852 TTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTT 5793 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| ||| || |||||||| | |||||| || || || || || || || || Sbjct 5792 GGCCTTCACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAATGGTTTTTCCAGT 5733 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 5732 TAAGGTCTTAACGAAAATCTGCAT 5709 Score = 118 bits (130), Expect = 3e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||| |||| |||||||| | |||||||| || ||||| | || || ||| Sbjct 5677 GTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCA 5618 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || |||||| || || ||||| ||||| ||||||||||| || |||| Sbjct 5617 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTC 5558 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| || || ||||| || | || || || || || || ||||| || Sbjct 5557 ACATTCTCAATAGTGTCAGATGCCTCAACTTCCAAGGTAATAGTCTTACC 5508 >seq778 Length=9235 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 |||||||| | || || || || |||||| || | || |||||| |||||||||| Sbjct 7748 CTTCAATATTTAGCTCCTTATACTGGTTGTACAATGGCTGAGTATTTTCGAGATAATGGA 7689 Query 5079 AAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||||| ||||| || | |||||||||||||||||| Sbjct 7688 AAACATGCATTAATAATATTTGATGATTTAAGTAAACAA 7650 >seq3 Length=82673 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | || ||||||||||||| ||||||||| | | |||| Sbjct 24712 TCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGA 24771 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| || || | ||| || || || || ||||| |||||||| Sbjct 24772 ATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTT 24831 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || |||||| ||| || | || | ||||| || | || || Sbjct 24832 ATCTTGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCACTTCAAGGGTTAT 24891 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || || | || | ||||||||| Sbjct 24892 AGTTTTACCGGTTAACGTCTTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192485621830202