Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq64 194 1e-44 >seq64 Length=40286 Score = 194 bits (214), Expect = 1e-44 Identities = 583/885 (66%), Gaps = 25/885 (3%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| || ||||||| || || | |||| ||||| |||||||| ||||| |||| ||| Sbjct 17115 AACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAA 17056 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 |||||| ||||| || ||| || || | || | || |||| || || Sbjct 17055 AGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGAGCAGCCTAA 16996 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | | ||| ||||| |||||||| ||||| || ||| | | | | || || Sbjct 16995 ACATTCTAATAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCAT 16936 Query 4427 TCCAATTAATCTCACA-GGTAGCG---CGTATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 |||||| || ||||| |||| | || | | || | |||| |||| | ||| | Sbjct 16935 TCCAAT-AAGATCACATGGTAATGATTCGCAGATAAATGA-TCTT--TCTACATCTACAG 16880 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 ||||| | | ||||| | || | | || | | ||||||| |||| | | | ||| Sbjct 16879 CTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTTATTTTCTAATAAACTATACA 16820 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 |||||| |||||| ||||| ||||| ||||| || |||| ||| ||| ||| | Sbjct 16819 TTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAG 16760 Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662 | | ||| ||||| | ||||| | ||| || || || ||| ||| || Sbjct 16759 TGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTCCACTAA 16700 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 | | || ||||| || ||| || || | || | || ||| | | ||| Sbjct 16699 ATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAGAGTTCG---TGT 16643 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATATA 4781 | ||||||||||| |||||| ||||| ||| ||| ||| || || | | ||| Sbjct 16642 CATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCA-GGTATATTTTCAATA 16584 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || | |||||| || | ||||| | |||| ||||||| | || || | | || Sbjct 16583 GCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAATCAACAAACTG 16524 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || |||| ||||| |||||||||| ||| |||||||| ||||| | | ||||| Sbjct 16523 TAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCA 16464 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACT 4960 | | ||| ||||| | ||||| ||| | | ||| ||||| || || || ||||| Sbjct 16463 GCAATTTGTACTTC-TCTCAAAAACTTACAAGATAAATTTTCTAACACAATTCCATCACT 16405 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCA--GGCTT---AAGT 5015 ||||||||||| ||||| ||||| ||| | | |||| ||| | ||| |||| Sbjct 16404 AGCTGCAAAAAATGCCAACACATGGTTTAT---GAAATGTTTCTCATTGTCTTTTAAAGT 16348 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || | | | ||||| ||| ||||||| ||||||| |||||||||| || ||| Sbjct 16347 TTCAT--AATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCT 16290 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGA 5120 || |||||||| || | | ||||| || ||||| ||||||| Sbjct 16289 TCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427034074478339