Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq483 109 1e-18 seq3 91.5 3e-13 >seq483 Length=14038 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| |||||||||||||| | ||||||||| |||||||||| ||| ||| Sbjct 6133 GTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCTTCTAATTGTTTTCCG 6074 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || || || || | | |||||||| || ||||| ||||| || Sbjct 6073 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTT 6014 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | ||||| |||||||| | ||||| ||||| ||||| | || Sbjct 6013 ACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATGGTTTTTCCCGTTAATGTT 5954 Query 152088 TTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || ||||| | ||||| ||| |||| ||| Sbjct 5953 TTAACGAAAATTTGCATACCACCTCTTAATCT 5922 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||||||||||||||| | ||||||||| || ||||| | ||| || Sbjct 6361 GTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCA 6302 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || || || || | | |||||||| || ||||| ||||| || Sbjct 6301 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTT 6242 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||||||| || ||||| | ||||| ||||| ||||| | || Sbjct 6241 ACATTTTCAATAGTGTCTGATGATTCCACTTCCAATGTAATGGTTTTTCCCGTTAATGTT 6182 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 6181 TTAACGAAAATTTGCAT 6165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| |||||||||||||| | ||||||||| || ||||| | ||| || Sbjct 5677 GTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGTTTTCCA 5618 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || || || || | | |||||||| || ||||| ||||| || Sbjct 5617 GCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTC 5558 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| |||| | |||| || ||| ||||| | |||||||| || || Sbjct 5557 ACATTCTCAATAGTGTCAGATGCCTCAACTTCCAAGGTAATAGTCTTACC 5508 >seq3 Length=82673 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| ||||||||||| |||||||| | | |||| |||||| | ||| || Sbjct 24731 GTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCTTCCAATTGTTTTCCA 24790 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | | |||||| || | | || |||||||| ||||||||||| ||| Sbjct 24791 GCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTGGTTTTC 24850 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || ||| |||||||| || |||||||| || || | ||| Sbjct 24851 ACATTTTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTTAACGTC 24910 Query 152088 TTCACGAAGACCTGCATTTT 152107 ||||| |||| |||||||| Sbjct 24911 TTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153776701329593