Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq483 141 2e-28 seq23 107 4e-18 seq3 105 1e-17 >seq483 Length=14038 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||| ||||||||||| |||| | || | ||||| |||| |||| Sbjct 6139 TGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCATCTTCTAATTGT 6080 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| || | |||||| || ||||| || || ||||||||||| || Sbjct 6079 TTTCCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTG 6020 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || ||||| || || | ||| ||||| | || || || || ||||| Sbjct 6019 GCCTTTACATTTTCAATAGTATCTGATGATTCTACTTCCAATGTAATGGTTTTTCCCGTT 5960 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| || ||||| Sbjct 5959 AATGTTTTAACGAAAATTTGCAT 5937 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||||||||||||| |||| | || | || || || | |||| Sbjct 6367 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGT 6308 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | |||||| || ||||| || || ||||||||||| || Sbjct 6307 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTG 6248 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || |||||||| || | ||| ||||| | || || || || ||||| Sbjct 6247 GCCTTTACATTTTCAATAGTGTCTGATGATTCCACTTCCAATGTAATGGTTTTTCCCGTT 6188 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| || ||||| Sbjct 6187 AATGTTTTAACGAAAATTTGCAT 6165 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||| |||||||| || || | || | || || || | |||| Sbjct 5911 TGTAAAGTGGATTCTTTCTGGATGTTATAATCCAATAAAGTTCTTCCGTCTTCCAATTGT 5852 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | |||||| || ||||| || || ||||||||||| || Sbjct 5851 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTG 5792 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || |||||||| || | ||| ||||| | || || || || || || Sbjct 5791 GCCTTCACATTTTCAATAGTGTCTGATGATTCCACTTCCAAGGTAATGGTTTTTCCAGTT 5732 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| |||||||| Sbjct 5731 AAGGTCTTAACGAAAATCTGCAT 5709 Score = 111 bits (122), Expect = 3e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||| ||||||||||| |||| | || | || || || | |||| Sbjct 5683 TGTAAGGTGGATTCTTTCTGGATGTTGTAATCAGATAAAGTTCTTCCGTCTTCCAATTGT 5624 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | |||||| || ||||| || || ||||||||||| || Sbjct 5623 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTG 5564 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 || || || | || |||||||| || || || ||||| | || || |||||||| Sbjct 5563 GCCTTCACATTCTCAATAGTGTCAGATGCCTCAACTTCCAAGGTAATAGTCTTACC 5508 >seq23 Length=57594 Score = 107 bits (118), Expect = 4e-18 Identities = 231/343 (67%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 44008 GGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATAT 44067 |||| || || || |||||||| | |||| ||||| |||| |||| ||| ||| Sbjct 43866 GGAAGAGTACAAGAAATTCCTCAGAATGAAAATACTCCTTTTTTTCCCATTTCTCCTTAT 43925 Query 44068 GGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCGTATGGGATG 44127 | | | || || | |||||| ||| ||| || |||||| | || || || ||| Sbjct 43926 GCTATTGCTAAACAATATGCACATTTCATTACTATCAATTATAGAGAATCATACAATATG 43985 Query 44128 TTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTG 44187 || | |||| |||| || ||||| |||||||| | ||||| | || || Sbjct 43986 TTTTGTGTTAATGGTATTTTATTTAATCATGAAAGTCCTAGAAGAGGAGAAACTTTTGTT 44045 Query 44188 ACTCGTAAAATCACGAAAGCGGTTGCGAATATTTTCAACGGGACAGAAAAATGCATGTAT 44247 ||||| ||||| || |||| | || || |||| || | |||||| || || | Sbjct 44046 ACTCGAAAAATTACAAAAGGAATAGCCAAAATTTGTAAAAATATAGAAAAGTGTATTACT 44105 Query 44248 CTAGGAAACATAGACTCTAAA-AGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCAT 44306 ||||||| ||||| | || | |||||||||||| | || ||||||||| | || || Sbjct 44106 TTAGGAAATATAGA-TGTATATAGAGATTGGGGACACGCTAAAGATTATGTACATGCGAT 44164 Query 44307 GTGGCTGATGTTGCAACAAGACAGGTCAGACGACTACGTTATT 44349 || || ||| | ||||||||| | | || || | |||||| Sbjct 44165 GTATCTAATGCTTCAACAAGACGAGCCTGAAGATTTTGTTATT 44207 >seq3 Length=82673 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 || ||||| |||||||||||| ||||| || | ||| || ||| ||| || | |||| Sbjct 24725 TGCAACGTAGATTCTTTTTGGATATTGTAATCCGAAAGGGTTCGGGAATCTTCCAATTGT 24784 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || || || || || ||| ||||| || ||||| ||||| || || Sbjct 24785 TTTCCAGCAAATATTAATCGCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTG 24844 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||| || | || ||| | || | || ||||| || || || || ||||| || Sbjct 24845 GTTTTCACATTTTCAATAATATCATTTGGCTCCACTTCAAGGGTTATAGTTTTACCGGTT 24904 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| || || || |||||||| Sbjct 24905 AACGTCTTCACAAAGATTTGCATTTT 24930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046699193954882