Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq28 84.2 5e-11 seq2 84.2 5e-11 seq1 84.2 5e-11 >seq28 Length=694207 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||| || |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 277954 CTTGCCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCG 277895 Query 165767 AGCCCC 165772 |||||| Sbjct 277894 AGCCCC 277889 >seq2 Length=4461408 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 772976 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCAGGGGTTCGAGCCCC 773031 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 773416 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCAGGGGTTCGAGCCCC 773471 >seq1 Length=4641914 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 790104 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCAGGGGTTCGAGCCCC 790159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057622583368430